AT5G39910

Description : Pectin lyase-like superfamily protein

Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0000273 (LandPlants) Phylogenetic Tree(s): OG_05_0000273_tree ,
OG_06_0000208 (SeedPlants) Phylogenetic Tree(s): OG_06_0000208_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G39910
Cluster	HCCA: Cluster_84

Target	Alias	Description	ECC score	Gene Family Method
AT1G05660	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT1G80140	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT2G43880	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT2G43890	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT3G07970	QRT2	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT4G01890	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT5G27530	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
GSVIVT01008061001	No alias	Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01008062001	No alias	Polygalacturonase OS=Juniperus ashei	0.05	Archaeplastida
LOC_Os05g20020.1	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	ISS	Interproscan
BP	GO:0008150	biological_process	None (Archaeplastida) Phylogenetic Tree(s):	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004565	beta-galactosidase activity	IEP	Neighborhood
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006071	glycerol metabolic process	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008889	glycerophosphodiester phosphodiesterase activity	IEP	Neighborhood
MF	GO:0015925	galactosidase activity	IEP	Neighborhood
BP	GO:0019400	alditol metabolic process	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	70	282

External Links

No external refs found!