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  5. MA_185599g0010

MA_185599g0010


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 523.0)


Gene families : OG0003733 (Archaeplastida) Phylogenetic Tree(s): OG0003733_tree ,
OG_05_0092876 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0073772 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_185599g0010
Cluster HCCA: Cluster_483

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00268520 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g23020... 0.03 Archaeplastida
AMTR_s00003p00261700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73710... 0.04 Archaeplastida
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.12 Archaeplastida
GSVIVT01018090001 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.08 Archaeplastida
Gb_07316 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.03 Archaeplastida
Gb_11434 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.02 Archaeplastida
Gb_20571 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
Gb_29869 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
LOC_Os03g06710.1 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.06 Archaeplastida
LOC_Os07g28900.1 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.06 Archaeplastida
MA_10426616g0010 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.03 Archaeplastida
MA_118886g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.06 Archaeplastida
MA_547597g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc07g054480.3.1 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.06 Archaeplastida
Zm00001e000477_P001 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 605 628
IPR002885 Pentatricopeptide_repeat 673 699
IPR002885 Pentatricopeptide_repeat 268 294
IPR002885 Pentatricopeptide_repeat 237 266
IPR002885 Pentatricopeptide_repeat 177 204
IPR002885 Pentatricopeptide_repeat 372 398
IPR002885 Pentatricopeptide_repeat 206 236
IPR002885 Pentatricopeptide_repeat 501 527
IPR002885 Pentatricopeptide_repeat 103 150
IPR002885 Pentatricopeptide_repeat 429 476
IPR002885 Pentatricopeptide_repeat 530 577
IPR002885 Pentatricopeptide_repeat 297 344
No external refs found!