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  5. AT5G40040

AT5G40040


Description : 60S acidic ribosomal protein family


Gene families : OG0001112 (Archaeplastida) Phylogenetic Tree(s): OG0001112_tree ,
OG_05_0001212 (LandPlants) Phylogenetic Tree(s): OG_05_0001212_tree ,
OG_06_0001391 (SeedPlants) Phylogenetic Tree(s): OG_06_0001391_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G40040
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020830.75 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
Cre02.g143050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
Mp1g08160.1 No alias component RPP2 of LSU proteome component 0.02 Archaeplastida
Pp3c10_2900V3.1 No alias 60S acidic ribosomal protein family 0.02 Archaeplastida
Pp3c1_27060V3.1 No alias 60S acidic ribosomal protein family 0.03 Archaeplastida
Pp3c2_15480V3.1 No alias 60S acidic ribosomal protein family 0.03 Archaeplastida
Pp3c6_20310V3.1 No alias 60S acidic ribosomal protein family 0.03 Archaeplastida
Solyc01g009447.1.1 No alias component RPP2 of LSU proteome component 0.02 Archaeplastida
Zm00001e041900_P001 No alias component RPP2 of LSU proteome component 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006414 translational elongation ISS Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004565 beta-galactosidase activity IEP Neighborhood
MF GO:0004743 pyruvate kinase activity IEP Neighborhood
CC GO:0005795 Golgi stack IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
MF GO:0008519 ammonium transmembrane transporter activity IEP Neighborhood
MF GO:0008883 glutamyl-tRNA reductase activity IEP Neighborhood
BP GO:0009555 pollen development IEP Neighborhood
BP GO:0009786 regulation of asymmetric cell division IEP Neighborhood
MF GO:0015398 high-affinity secondary active ammonium transmembrane transporter activity IEP Neighborhood
BP GO:0015695 organic cation transport IEP Neighborhood
CC GO:0015935 small ribosomal subunit IEP Neighborhood
CC GO:0022627 cytosolic small ribosomal subunit IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
BP GO:0048229 gametophyte development IEP Neighborhood
BP GO:0072488 ammonium transmembrane transport IEP Neighborhood
BP GO:0080154 regulation of fertilization IEP Neighborhood
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!