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MA_19015g0010


Description : pre-mRNA splicing regulator (DDX5)


Gene families : OG0000695 (Archaeplastida) Phylogenetic Tree(s): OG0000695_tree ,
OG_05_0003605 (LandPlants) Phylogenetic Tree(s): OG_05_0003605_tree ,
OG_06_0003577 (SeedPlants) Phylogenetic Tree(s): OG_06_0003577_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_19015g0010
Cluster HCCA: Cluster_393

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00096p00079870 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT3G06480 No alias DEAD box RNA helicase family protein 0.06 Archaeplastida
GSVIVT01016847001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
GSVIVT01032442001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.05 Archaeplastida
LOC_Os01g07740.1 No alias DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa... 0.02 Archaeplastida
LOC_Os01g36860.1 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.04 Archaeplastida
LOC_Os11g46240.1 No alias DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.02 Archaeplastida
Mp3g07940.1 No alias pre-mRNA splicing regulator (DDX5) 0.02 Archaeplastida
Pp3c1_24700V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.04 Archaeplastida
Solyc01g057760.4.1 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis... 0.04 Archaeplastida
Solyc03g112350.4.1 No alias pre-mRNA splicing regulator (DDX5) 0.03 Archaeplastida
Zm00001e011376_P001 No alias ATP-dependent RNA helicase-like protein DB10... 0.07 Archaeplastida
Zm00001e020727_P006 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.06 Archaeplastida
Zm00001e020972_P005 No alias DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e027719_P003 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 376 485
IPR011545 DEAD/DEAH_box_helicase_dom 169 340
No external refs found!