AT5G40850 (UPM1)

Aliases : UPM1

Description : urophorphyrin methylase 1

Gene families : OG0003509 (Archaeplastida) Phylogenetic Tree(s): OG0003509_tree ,
OG_05_0004429 (LandPlants) Phylogenetic Tree(s): OG_05_0004429_tree ,
OG_06_0003826 (SeedPlants) Phylogenetic Tree(s): OG_06_0003826_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G40850
Cluster	HCCA: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00093p00090340	evm_27.TU.AmTr_v1...	Coenzyme metabolism.tetrapyrrol biosynthesis.siroheme...	0.03	Archaeplastida
Cre12.g538650	No alias	Coenzyme metabolism.tetrapyrrol biosynthesis.siroheme...	0.02	Archaeplastida
Pp3c10_8730V3.1	No alias	urophorphyrin methylase 1	0.09	Archaeplastida
Solyc01g086650.3.1	No alias	uroporphyrinogen III methyltransferase	0.07	Archaeplastida
Zm00001e020395_P002	No alias	uroporphyrinogen III methyltransferase	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004851	uroporphyrin-III C-methyltransferase activity	IDA	Interproscan
MF	GO:0004851	uroporphyrin-III C-methyltransferase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006566	threonine metabolic process	None	Extended
BP	GO:0006567	threonine catabolic process	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006778	porphyrin-containing compound metabolic process	None	Extended
BP	GO:0006779	porphyrin-containing compound biosynthetic process	ISS	Interproscan
BP	GO:0006783	heme biosynthetic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008169	C-methyltransferase activity	None	Extended
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009063	cellular amino acid catabolic process	None	Extended
BP	GO:0009066	aspartate family amino acid metabolic process	None	Extended
BP	GO:0009068	aspartate family amino acid catabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019354	siroheme biosynthetic process	IDA	Interproscan
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0033013	tetrapyrrole metabolic process	None	Extended
BP	GO:0033014	tetrapyrrole biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042168	heme metabolic process	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046148	pigment biosynthetic process	None	Extended
BP	GO:0046156	siroheme metabolic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051186	cofactor metabolic process	None	Extended
BP	GO:0051188	cofactor biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901606	alpha-amino acid catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Neighborhood
MF	GO:0000234	phosphoethanolamine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
BP	GO:0001505	regulation of neurotransmitter levels	IEP	Neighborhood
MF	GO:0004478	methionine adenosyltransferase activity	IEP	Neighborhood
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	Neighborhood
MF	GO:0005402	carbohydrate:cation symporter activity	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
CC	GO:0005886	plasma membrane	IEP	Neighborhood
BP	GO:0006544	glycine metabolic process	IEP	Neighborhood
BP	GO:0006546	glycine catabolic process	IEP	Neighborhood
BP	GO:0006556	S-adenosylmethionine biosynthetic process	IEP	Neighborhood
BP	GO:0006568	tryptophan metabolic process	IEP	Neighborhood
BP	GO:0006569	tryptophan catabolic process	IEP	Neighborhood
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Neighborhood
BP	GO:0006586	indolalkylamine metabolic process	IEP	Neighborhood
BP	GO:0006595	polyamine metabolic process	IEP	Neighborhood
BP	GO:0006598	polyamine catabolic process	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006656	phosphatidylcholine biosynthetic process	IEP	Neighborhood
BP	GO:0006790	sulfur compound metabolic process	IEP	Neighborhood
BP	GO:0006809	nitric oxide biosynthetic process	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
MF	GO:0008940	nitrate reductase activity	IEP	Neighborhood
BP	GO:0009069	serine family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009071	serine family amino acid catabolic process	IEP	Neighborhood
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	Neighborhood
BP	GO:0009266	response to temperature stimulus	IEP	Neighborhood
BP	GO:0009308	amine metabolic process	IEP	Neighborhood
BP	GO:0009310	amine catabolic process	IEP	Neighborhood
BP	GO:0009409	response to cold	IEP	Neighborhood
BP	GO:0009410	response to xenobiotic stimulus	IEP	Neighborhood
CC	GO:0009532	plastid stroma	IEP	Neighborhood
CC	GO:0009570	chloroplast stroma	IEP	Neighborhood
BP	GO:0009605	response to external stimulus	IEP	Neighborhood
BP	GO:0009607	response to biotic stimulus	IEP	Neighborhood
BP	GO:0009608	response to symbiont	IEP	Neighborhood
BP	GO:0009610	response to symbiotic fungus	IEP	Neighborhood
BP	GO:0009617	response to bacterium	IEP	Neighborhood
BP	GO:0009620	response to fungus	IEP	Neighborhood
BP	GO:0009624	response to nematode	IEP	Neighborhood
BP	GO:0009628	response to abiotic stimulus	IEP	Neighborhood
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Neighborhood
MF	GO:0009703	nitrate reductase (NADH) activity	IEP	Neighborhood
CC	GO:0009705	plant-type vacuole membrane	IEP	Neighborhood
BP	GO:0009808	lignin metabolic process	IEP	Neighborhood
BP	GO:0009809	lignin biosynthetic process	IEP	Neighborhood
BP	GO:0010035	response to inorganic substance	IEP	Neighborhood
CC	GO:0010319	stromule	IEP	Neighborhood
BP	GO:0015804	neutral amino acid transport	IEP	Neighborhood
BP	GO:0015824	proline transport	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	Neighborhood
MF	GO:0016662	oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor	IEP	Neighborhood
MF	GO:0016664	oxidoreductase activity, acting on other nitrogenous compounds as donors, iron-sulfur protein as acceptor	IEP	Neighborhood
BP	GO:0017001	antibiotic catabolic process	IEP	Neighborhood
BP	GO:0017144	drug metabolic process	IEP	Neighborhood
BP	GO:0019748	secondary metabolic process	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
BP	GO:0042126	nitrate metabolic process	IEP	Neighborhood
BP	GO:0042128	nitrate assimilation	IEP	Neighborhood
BP	GO:0042133	neurotransmitter metabolic process	IEP	Neighborhood
BP	GO:0042135	neurotransmitter catabolic process	IEP	Neighborhood
BP	GO:0042136	neurotransmitter biosynthetic process	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	Neighborhood
BP	GO:0042436	indole-containing compound catabolic process	IEP	Neighborhood
BP	GO:0042631	cellular response to water deprivation	IEP	Neighborhood
BP	GO:0042737	drug catabolic process	IEP	Neighborhood
BP	GO:0042742	defense response to bacterium	IEP	Neighborhood
BP	GO:0042744	hydrogen peroxide catabolic process	IEP	Neighborhood
BP	GO:0043207	response to external biotic stimulus	IEP	Neighborhood
BP	GO:0044106	cellular amine metabolic process	IEP	Neighborhood
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Neighborhood
BP	GO:0046209	nitric oxide metabolic process	IEP	Neighborhood
BP	GO:0046218	indolalkylamine catabolic process	IEP	Neighborhood
BP	GO:0046470	phosphatidylcholine metabolic process	IEP	Neighborhood
BP	GO:0046500	S-adenosylmethionine metabolic process	IEP	Neighborhood
MF	GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0047889	ferredoxin-nitrate reductase activity	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood
MF	GO:0050421	nitrite reductase (NO-forming) activity	IEP	Neighborhood
BP	GO:0050829	defense response to Gram-negative bacterium	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051704	multi-organism process	IEP	Neighborhood
BP	GO:0051707	response to other organism	IEP	Neighborhood
MF	GO:0052667	phosphomethylethanolamine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0060776	simple leaf morphogenesis	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
BP	GO:0070417	cellular response to cold	IEP	Neighborhood
BP	GO:0071229	cellular response to acid chemical	IEP	Neighborhood
BP	GO:0071462	cellular response to water stimulus	IEP	Neighborhood
BP	GO:0071470	cellular response to osmotic stress	IEP	Neighborhood
BP	GO:0071472	cellular response to salt stress	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0071941	nitrogen cycle metabolic process	IEP	Neighborhood
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Neighborhood
BP	GO:0097164	ammonium ion metabolic process	IEP	Neighborhood
MF	GO:0098809	nitrite reductase activity	IEP	Neighborhood
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	Neighborhood
BP	GO:2001057	reactive nitrogen species metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000878	4pyrrol_Mease	117	327

External Links

No external refs found!

AT5G40850 (UPM1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation