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  5. MA_19597g0010

MA_19597g0010


Description : no hits & (original description: none)


Gene families : OG0000181 (Archaeplastida) Phylogenetic Tree(s): OG0000181_tree ,
OG_05_0008052 (LandPlants) Phylogenetic Tree(s): OG_05_0008052_tree ,
OG_06_0005013 (SeedPlants) Phylogenetic Tree(s): OG_06_0005013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_19597g0010
Cluster HCCA: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00247260 evm_27.TU.AmTr_v1... Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana 0.08 Archaeplastida
AMTR_s00053p00180370 evm_27.TU.AmTr_v1... Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00090p00129130 evm_27.TU.AmTr_v1... Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00109p00027450 evm_27.TU.AmTr_v1... Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT1G01110 IQD18 IQ-domain 18 0.04 Archaeplastida
AT1G17480 IQD7 IQ-domain 7 0.04 Archaeplastida
AT1G72670 iqd8 IQ-domain 8 0.05 Archaeplastida
AT3G51380 IQD20 IQ-domain 20 0.03 Archaeplastida
GSVIVT01019668001 No alias Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01035382001 No alias Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01037598001 No alias Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_01817 No alias Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os01g09790.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os01g51230.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os01g61720.8 No alias Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os03g57330.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os08g02250.1 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_81306g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_81306g0020 No alias Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp3g23600.1 No alias Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp7g08970.1 No alias Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Pp3c4_3290V3.1 No alias IQ-domain 2 0.02 Archaeplastida
Solyc01g009340.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc08g062940.4.1 No alias Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Solyc08g083240.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e005923_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e016563_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e020006_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e021855_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000048 IQ_motif_EF-hand-BS 231 245
IPR000048 IQ_motif_EF-hand-BS 206 225
IPR025064 DUF4005 458 564
No external refs found!