AT5G41000 (YSL4)

Aliases : YSL4

Description : YELLOW STRIPE like 4

Gene families : OG0000193 (Archaeplastida) Phylogenetic Tree(s): OG0000193_tree ,
OG_05_0000331 (LandPlants) Phylogenetic Tree(s): OG_05_0000331_tree ,
OG_06_0005472 (SeedPlants) Phylogenetic Tree(s): OG_06_0005472_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G41000
Cluster	HCCA: Cluster_91

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00088380	evm_27.TU.AmTr_v1...	Probable metal-nicotianamine transporter YSL5...	0.02	Archaeplastida
AMTR_s00029p00088690	evm_27.TU.AmTr_v1...	Solute transport.carrier-mediated transport.OPT...	0.02	Archaeplastida
MA_10433998g0010	No alias	iron chelator transporter (YSL). ferric cation-chelator...	0.05	Archaeplastida
MA_494146g0010	No alias	iron chelator transporter (YSL). ferric cation-chelator...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006857	oligopeptide transport	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0015833	peptide transport	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0042886	amide transport	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044437	vacuolar part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098805	whole membrane	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Neighborhood
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEP	Neighborhood
MF	GO:0005310	dicarboxylic acid transmembrane transporter activity	IEP	Neighborhood
CC	GO:0005667	transcription factor complex	IEP	Neighborhood
CC	GO:0005675	transcription factor TFIIH holo complex	IEP	Neighborhood
CC	GO:0005743	mitochondrial inner membrane	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006261	DNA-dependent DNA replication	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006289	nucleotide-excision repair	IEP	Neighborhood
BP	GO:0006301	postreplication repair	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006476	protein deacetylation	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006722	triterpenoid metabolic process	IEP	Neighborhood
BP	GO:0006783	heme biosynthetic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006835	dicarboxylic acid transport	IEP	Neighborhood
BP	GO:0006839	mitochondrial transport	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
MF	GO:0008131	primary amine oxidase activity	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
MF	GO:0008398	sterol 14-demethylase activity	IEP	Neighborhood
CC	GO:0008541	proteasome regulatory particle, lid subcomplex	IEP	Neighborhood
BP	GO:0009561	megagametogenesis	IEP	Neighborhood
MF	GO:0009918	sterol delta7 reductase activity	IEP	Neighborhood
MF	GO:0015141	succinate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015238	drug transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015556	C4-dicarboxylate transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015711	organic anion transport	IEP	Neighborhood
BP	GO:0015740	C4-dicarboxylate transport	IEP	Neighborhood
BP	GO:0015744	succinate transport	IEP	Neighborhood
BP	GO:0015849	organic acid transport	IEP	Neighborhood
BP	GO:0015893	drug transport	IEP	Neighborhood
BP	GO:0016104	triterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016125	sterol metabolic process	IEP	Neighborhood
BP	GO:0016126	sterol biosynthetic process	IEP	Neighborhood
BP	GO:0016444	somatic cell DNA recombination	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
BP	GO:0016575	histone deacetylation	IEP	Neighborhood
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Neighborhood
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
BP	GO:0018193	peptidyl-amino acid modification	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
BP	GO:0019742	pentacyclic triterpenoid metabolic process	IEP	Neighborhood
BP	GO:0019745	pentacyclic triterpenoid biosynthetic process	IEP	Neighborhood
CC	GO:0019866	organelle inner membrane	IEP	Neighborhood
CC	GO:0030176	integral component of endoplasmic reticulum membrane	IEP	Neighborhood
CC	GO:0031227	intrinsic component of endoplasmic reticulum membrane	IEP	Neighborhood
CC	GO:0031966	mitochondrial membrane	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
MF	GO:0032451	demethylase activity	IEP	Neighborhood
CC	GO:0032806	carboxy-terminal domain protein kinase complex	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
BP	GO:0035601	protein deacylation	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0042168	heme metabolic process	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044798	nuclear transcription factor complex	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0046942	carboxylic acid transport	IEP	Neighborhood
BP	GO:0051568	histone H3-K4 methylation	IEP	Neighborhood
BP	GO:0051726	regulation of cell cycle	IEP	Neighborhood
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Neighborhood
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Neighborhood
BP	GO:0098732	macromolecule deacylation	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1902554	serine/threonine protein kinase complex	IEP	Neighborhood
CC	GO:1902911	protein kinase complex	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004813	OPT	34	654

External Links

No external refs found!

AT5G41000 (YSL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation