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  5. MA_197257g0010

MA_197257g0010


Description : Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana (sp|q9shz8|pp168_arath : 637.0)


Gene families : OG0020831 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0020496 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0019696 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_197257g0010
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
Gb_33112 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006783 heme biosynthetic process IEP Neighborhood
BP GO:0006784 heme a biosynthetic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0042168 heme metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
BP GO:0046160 heme a metabolic process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 528 575
IPR002885 Pentatricopeptide_repeat 426 474
IPR002885 Pentatricopeptide_repeat 295 342
IPR032867 DYW_dom 701 825
IPR002885 Pentatricopeptide_repeat 238 263
IPR002885 Pentatricopeptide_repeat 370 395
IPR002885 Pentatricopeptide_repeat 669 697
IPR002885 Pentatricopeptide_repeat 134 163
IPR002885 Pentatricopeptide_repeat 103 130
IPR002885 Pentatricopeptide_repeat 502 526
IPR002885 Pentatricopeptide_repeat 167 194
IPR002885 Pentatricopeptide_repeat 68 97
No external refs found!