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  5. MA_20585g0020

MA_20585g0020


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 565.0)


Gene families : OG0012883 (Archaeplastida) Phylogenetic Tree(s): OG0012883_tree ,
OG_05_0012816 (LandPlants) Phylogenetic Tree(s): OG_05_0012816_tree ,
OG_06_0012813 (SeedPlants) Phylogenetic Tree(s): OG_06_0012813_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_20585g0020
Cluster HCCA: Cluster_308

Target Alias Description ECC score Gene Family Method Actions
Gb_26052 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.06 Archaeplastida
Gb_32913 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_935573g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Neighborhood
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009112 nucleobase metabolic process IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0046112 nucleobase biosynthetic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 362 400
IPR002885 Pentatricopeptide_repeat 139 169
IPR002885 Pentatricopeptide_repeat 478 499
IPR002885 Pentatricopeptide_repeat 78 105
IPR002885 Pentatricopeptide_repeat 16 45
IPR002885 Pentatricopeptide_repeat 46 75
IPR002885 Pentatricopeptide_repeat 299 347
IPR002885 Pentatricopeptide_repeat 198 246
IPR002885 Pentatricopeptide_repeat 401 448
IPR002885 Pentatricopeptide_repeat 106 138
No external refs found!