MA_20746g0010


Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 543.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_20746g0010
Cluster HCCA: Cluster_469

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00220510 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00025p00155620 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
AMTR_s00031p00067070 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.03 Archaeplastida
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G46460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G48910 LPA66 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G66520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Gb_00195 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_02373 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 Archaeplastida
Gb_03571 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_03572 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_03578 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_04430 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_05649 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_09741 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_10157 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_11219 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_11220 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_11926 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_12585 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Gb_13222 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_14133 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_14867 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_14966 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.04 Archaeplastida
Gb_16327 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_16664 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
Gb_17076 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_18745 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
Gb_25130 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.04 Archaeplastida
Gb_26049 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_27322 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_29768 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.03 Archaeplastida
Gb_29873 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_31374 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_33335 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_34299 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_34816 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_35190 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_38679 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_39402 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
LOC_Os02g53050.1 No alias RNA editing factor (CLB19) 0.03 Archaeplastida
Pp3c24_8560V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Smo102968 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Archaeplastida
Smo181046 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e003605_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Zm00001e004121_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e011467_P004 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 94 122
IPR002885 Pentatricopeptide_repeat 275 298
IPR032867 DYW_dom 374 497
IPR002885 Pentatricopeptide_repeat 21 69
IPR002885 Pentatricopeptide_repeat 200 247
IPR002885 Pentatricopeptide_repeat 123 170
No external refs found!