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  5. MA_20782g0010

MA_20782g0010


Description : Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana (sp|q9zuw3|pp172_arath : 661.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000064 (SeedPlants) Phylogenetic Tree(s): OG_06_0000064_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_20782g0010
Cluster HCCA: Cluster_461

Target Alias Description ECC score Gene Family Method Actions
AT5G27110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Cre01.g025950 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.01 Archaeplastida
GSVIVT01035759001 No alias Pentatricopeptide repeat-containing protein At2g20540... 0.06 Archaeplastida
LOC_Os01g27650.1 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
LOC_Os04g14130.1 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.05 Archaeplastida
LOC_Os11g01860.1 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
MA_10138132g0010 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.06 Archaeplastida
MA_73205g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
Pp3c3_24770V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Smo105356 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.01 Archaeplastida
Smo11486 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.02 Archaeplastida
Smo442088 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.02 Archaeplastida
Smo51483 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.02 Archaeplastida
Zm00001e012838_P001 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 150 198
IPR002885 Pentatricopeptide_repeat 252 299
IPR002885 Pentatricopeptide_repeat 353 400
IPR002885 Pentatricopeptide_repeat 50 97
IPR002885 Pentatricopeptide_repeat 454 501
IPR032867 DYW_dom 627 751
IPR002885 Pentatricopeptide_repeat 18 47
IPR002885 Pentatricopeptide_repeat 125 147
IPR002885 Pentatricopeptide_repeat 528 553
IPR002885 Pentatricopeptide_repeat 428 452
No external refs found!