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  5. MA_211369g0010

MA_211369g0010


Description : Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana (sp|o82268|lsh3_arath : 195.0)


Gene families : OG0000579 (Archaeplastida) Phylogenetic Tree(s): OG0000579_tree ,
OG_05_0000324 (LandPlants) Phylogenetic Tree(s): OG_05_0000324_tree ,
OG_06_0000239 (SeedPlants) Phylogenetic Tree(s): OG_06_0000239_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_211369g0010
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.03 Archaeplastida
Gb_15426 No alias Protein G1-like5 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Gb_39186 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
LOC_Os02g41460.1 No alias Protein G1-like3 OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
LOC_Os04g43580.2 No alias Protein G1-like3 OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
Solyc06g083860.2.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 Archaeplastida
Solyc07g150147.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.02 Archaeplastida
Zm00001e012687_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.02 Archaeplastida
Zm00001e019403_P001 No alias Protein G1-like7 OS=Oryza sativa subsp. indica... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006936 ALOG_dom 46 103
IPR006936 ALOG_dom 103 144
No external refs found!