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  5. MA_21580g0010

MA_21580g0010


Description : Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana (sp|p0c8a0|pp275_arath : 531.0)


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0006699 (SeedPlants) Phylogenetic Tree(s): OG_06_0006699_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_21580g0010
Cluster HCCA: Cluster_359

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00238660 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g20300,... 0.02 Archaeplastida
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.05 Archaeplastida
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.03 Archaeplastida
Gb_06907 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.04 Archaeplastida
Gb_08432 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 Archaeplastida
Gb_10944 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.03 Archaeplastida
Gb_19758 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_21593 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.03 Archaeplastida
Gb_39082 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.03 Archaeplastida
Gb_41835 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.04 Archaeplastida
LOC_Os03g53490.1 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.06 Archaeplastida
MA_61663g0010 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.05 Archaeplastida
MA_95186g0010 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.04 Archaeplastida
Solyc09g082390.3.1 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.03 Archaeplastida
Zm00001e005655_P001 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.02 Archaeplastida
Zm00001e007565_P002 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.04 Archaeplastida
Zm00001e015617_P001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
Zm00001e028873_P001 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 163 208
IPR002885 Pentatricopeptide_repeat 298 347
IPR002885 Pentatricopeptide_repeat 481 507
IPR002885 Pentatricopeptide_repeat 442 471
IPR002885 Pentatricopeptide_repeat 514 543
IPR002885 Pentatricopeptide_repeat 260 292
IPR002885 Pentatricopeptide_repeat 227 256
IPR002885 Pentatricopeptide_repeat 357 413
No external refs found!