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Description : Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana (sp|q94f30|esd4_arath : 107.0)
Gene families : OG0001723 (Archaeplastida) Phylogenetic Tree(s): OG0001723_tree ,
OG_05_0002498 (LandPlants) Phylogenetic Tree(s): OG_05_0002498_tree ,
OG_06_0073924 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_23278g0010 | |
| Cluster | HCCA: Cluster_360 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| LOC_Os01g25370.1 | No alias | protease (ELS) | 0.02 | Archaeplastida | |
| Pp3c22_12640V3.1 | No alias | UB-like protease 1A | 0.03 | Archaeplastida | |
| Zm00001e001628_P004 | No alias | protease (ELS) | 0.03 | Archaeplastida | |
| Zm00001e010955_P001 | No alias | protease (ELS) | 0.02 | Archaeplastida | |
| Zm00001e026287_P003 | No alias | protease (ELS) | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006508 | proteolysis | IEA | Interproscan |
| MF | GO:0008234 | cysteine-type peptidase activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003682 | chromatin binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006413 | translational initiation | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
| BP | GO:0009451 | RNA modification | IEP | Neighborhood |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Neighborhood |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
| BP | GO:0016458 | gene silencing | IEP | Neighborhood |
| MF | GO:0016866 | intramolecular transferase activity | IEP | Neighborhood |
| CC | GO:0030684 | preribosome | IEP | Neighborhood |
| CC | GO:0030688 | preribosome, small subunit precursor | IEP | Neighborhood |
| BP | GO:0031047 | gene silencing by RNA | IEP | Neighborhood |
| BP | GO:0040008 | regulation of growth | IEP | Neighborhood |
| BP | GO:0045927 | positive regulation of growth | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0048518 | positive regulation of biological process | IEP | Neighborhood |
| BP | GO:0048519 | negative regulation of biological process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003653 | Peptidase_C48_C | 321 | 365 |
| No external refs found! |