AT5G43540

Description : C2H2 and C2HC zinc fingers superfamily protein

Gene families : OG0000055 (Archaeplastida) Phylogenetic Tree(s): OG0000055_tree ,
OG_05_0000021 (LandPlants) Phylogenetic Tree(s): OG_05_0000021_tree ,
OG_06_0000388 (SeedPlants) Phylogenetic Tree(s): OG_06_0000388_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G43540
Cluster	HCCA: Cluster_212

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00139230	evm_27.TU.AmTr_v1...	No description available	0.03	Archaeplastida
AMTR_s00057p00086480	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.05	Archaeplastida
AMTR_s00088p00145510	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	Archaeplastida
AMTR_s00124p00105750	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.05	Archaeplastida
AMTR_s00149p00097070	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.06	Archaeplastida
AT1G80730	ZFP1, ATZFP1	zinc-finger protein 1	0.04	Archaeplastida
AT5G14010	KNU	C2H2 and C2HC zinc fingers superfamily protein	0.05	Archaeplastida
AT5G48890	No alias	C2H2-like zinc finger protein	0.05	Archaeplastida
GSVIVT01011868001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	Archaeplastida
GSVIVT01013168001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.04	Archaeplastida
GSVIVT01016493001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.04	Archaeplastida
GSVIVT01031007001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.06	Archaeplastida
GSVIVT01037897001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.04	Archaeplastida
Gb_15338	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
LOC_Os01g04120.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
LOC_Os01g32920.1	No alias	C2H2 zinc finger transcription factor	0.05	Archaeplastida
LOC_Os02g01090.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
LOC_Os03g05490.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os03g41110.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
LOC_Os04g08600.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os05g14130.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os05g20930.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
LOC_Os07g40300.1	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
LOC_Os09g26200.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
LOC_Os09g27320.1	No alias	C2H2 zinc finger transcription factor	0.05	Archaeplastida
LOC_Os09g38610.1	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
MA_113057g0020	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_424g0010	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
MA_48488g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_54742g0010	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
MA_57615g0010	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
MA_5999529g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Pp3c2_32900V3.1	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.02	Archaeplastida
Pp3c6_19230V3.1	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.03	Archaeplastida
Solyc01g107430.2.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Solyc03g117070.1.1	No alias	C2H2 zinc finger transcription factor	0.07	Archaeplastida
Solyc05g009180.1.1	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Solyc05g009380.4.1	No alias	Zinc finger protein JAGGED OS=Arabidopsis thaliana...	0.05	Archaeplastida
Solyc07g006880.1.1	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Solyc09g066250.1.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc10g084910.3.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc11g011890.2.1	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Zm00001e005916_P001	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Zm00001e009853_P001	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Zm00001e011910_P001	No alias	C2H2 zinc finger transcription factor	0.05	Archaeplastida
Zm00001e012453_P001	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Zm00001e017009_P001	No alias	C2H2 zinc finger transcription factor	0.07	Archaeplastida
Zm00001e020926_P001	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Zm00001e025746_P001	No alias	C2H2 zinc finger transcription factor	0.07	Archaeplastida
Zm00001e032639_P001	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Zm00001e034883_P001	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Zm00001e036816_P001	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Zm00001e037944_P001	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Zm00001e037946_P001	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
MF	GO:0003680	AT DNA binding	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0004860	protein kinase inhibitor activity	IEP	Neighborhood
MF	GO:0004861	cyclin-dependent protein serine/threonine kinase inhibitor activity	IEP	Neighborhood
MF	GO:0005199	structural constituent of cell wall	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005911	cell-cell junction	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006826	iron ion transport	IEP	Neighborhood
BP	GO:0006869	lipid transport	IEP	Neighborhood
BP	GO:0007088	regulation of mitotic nuclear division	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
MF	GO:0008936	nicotinamidase activity	IEP	Neighborhood
BP	GO:0009267	cellular response to starvation	IEP	Neighborhood
CC	GO:0009506	plasmodesma	IEP	Neighborhood
BP	GO:0009561	megagametogenesis	IEP	Neighborhood
BP	GO:0009806	lignan metabolic process	IEP	Neighborhood
BP	GO:0009807	lignan biosynthetic process	IEP	Neighborhood
MF	GO:0009927	histidine phosphotransfer kinase activity	IEP	Neighborhood
BP	GO:0009991	response to extracellular stimulus	IEP	Neighborhood
BP	GO:0010026	trichome differentiation	IEP	Neighborhood
BP	GO:0010035	response to inorganic substance	IEP	Neighborhood
BP	GO:0010053	root epidermal cell differentiation	IEP	Neighborhood
BP	GO:0010054	trichoblast differentiation	IEP	Neighborhood
BP	GO:0010106	cellular response to iron ion starvation	IEP	Neighborhood
BP	GO:0010167	response to nitrate	IEP	Neighborhood
MF	GO:0010283	pinoresinol reductase activity	IEP	Neighborhood
MF	GO:0010427	abscisic acid binding	IEP	Neighborhood
BP	GO:0010639	negative regulation of organelle organization	IEP	Neighborhood
BP	GO:0010948	negative regulation of cell cycle process	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
BP	GO:0015706	nitrate transport	IEP	Neighborhood
BP	GO:0016049	cell growth	IEP	Neighborhood
BP	GO:0016125	sterol metabolic process	IEP	Neighborhood
BP	GO:0016126	sterol biosynthetic process	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0019210	kinase inhibitor activity	IEP	Neighborhood
MF	GO:0019840	isoprenoid binding	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
CC	GO:0030054	cell junction	IEP	Neighborhood
BP	GO:0030154	cell differentiation	IEP	Neighborhood
MF	GO:0030291	protein serine/threonine kinase inhibitor activity	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
BP	GO:0031667	response to nutrient levels	IEP	Neighborhood
BP	GO:0031668	cellular response to extracellular stimulus	IEP	Neighborhood
BP	GO:0031669	cellular response to nutrient levels	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
MF	GO:0033293	monocarboxylic acid binding	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
MF	GO:0042562	hormone binding	IEP	Neighborhood
BP	GO:0042594	response to starvation	IEP	Neighborhood
MF	GO:0043178	alcohol binding	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
BP	GO:0045839	negative regulation of mitotic nuclear division	IEP	Neighborhood
BP	GO:0045930	negative regulation of mitotic cell cycle	IEP	Neighborhood
BP	GO:0048469	cell maturation	IEP	Neighborhood
BP	GO:0048588	developmental cell growth	IEP	Neighborhood
BP	GO:0048589	developmental growth	IEP	Neighborhood
BP	GO:0048764	trichoblast maturation	IEP	Neighborhood
BP	GO:0048765	root hair cell differentiation	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
BP	GO:0048869	cellular developmental process	IEP	Neighborhood
BP	GO:0051129	negative regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051783	regulation of nuclear division	IEP	Neighborhood
BP	GO:0051784	negative regulation of nuclear division	IEP	Neighborhood
BP	GO:0052541	plant-type cell wall cellulose metabolic process	IEP	Neighborhood
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Neighborhood
BP	GO:0071496	cellular response to external stimulus	IEP	Neighborhood
BP	GO:0071695	anatomical structure maturation	IEP	Neighborhood
BP	GO:0090627	plant epidermal cell differentiation	IEP	Neighborhood
BP	GO:1901698	response to nitrogen compound	IEP	Neighborhood
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	Neighborhood

No InterPro domains available for this sequence

External Links

No external refs found!

AT5G43540

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation