MA_263724g0010


Description : DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana (sp|o65607|msh3_arath : 85.5)


Gene families : OG0002173 (Archaeplastida) Phylogenetic Tree(s): OG0002173_tree ,
OG_05_0007295 (LandPlants) Phylogenetic Tree(s): OG_05_0007295_tree ,
OG_06_0008731 (SeedPlants) Phylogenetic Tree(s): OG_06_0008731_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_263724g0010
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00265580 evm_27.TU.AmTr_v1... DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00018p00168540 evm_27.TU.AmTr_v1... DNA mismatch repair protein MSH1, mitochondrial... 0.05 Archaeplastida
Gb_24817 No alias DNA mismatch repair protein MSH2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os04g58410.1 No alias DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Mp2g11550.1 No alias DNA mismatch repair protein MSH1, mitochondrial... 0.02 Archaeplastida
Pp3c17_13780V3.1 No alias DNA mismatch repair protein MutS, type 2 0.04 Archaeplastida
Pp3c5_20780V3.1 No alias DNA mismatch repair protein MutS, type 2 0.02 Archaeplastida
Solyc02g078390.3.1 No alias DNA mismatch repair protein MSH1, mitochondrial... 0.03 Archaeplastida
Solyc03g080010.3.1 No alias no hits & (original description: none) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004325 ferrochelatase activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005381 iron ion transmembrane transporter activity IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006783 heme biosynthetic process IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0034755 iron ion transmembrane transport IEP Neighborhood
BP GO:0042168 heme metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0051188 cofactor biosynthetic process IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000432 DNA_mismatch_repair_MutS_C 433 632
No external refs found!