MA_2656g0010

Description : 40S ribosomal protein S16 OS=Gossypium hirsutum (sp|p46293|rs16_goshi : 101.0)

Gene families : OG0002343 (Archaeplastida) Phylogenetic Tree(s): OG0002343_tree ,
OG_05_0002210 (LandPlants) Phylogenetic Tree(s): OG_05_0002210_tree ,
OG_06_0002828 (SeedPlants) Phylogenetic Tree(s): OG_06_0002828_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_2656g0010
Cluster	HCCA: Cluster_208

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00161540	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	Archaeplastida
AMTR_s00046p00076360	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.13	Archaeplastida
AT2G09990	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.13	Archaeplastida
Cpa\|evm.model.tig00000123.14	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.14	Archaeplastida
Cre13.g573351	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.23	Archaeplastida
GSVIVT01017923001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	Archaeplastida
Gb_05712	No alias	component RPS16 of SSU proteome	0.08	Archaeplastida
LOC_Os11g03400.1	No alias	component RPS16 of SSU proteome	0.08	Archaeplastida
LOC_Os12g03090.1	No alias	component RPS16 of SSU proteome	0.07	Archaeplastida
Mp1g07720.1	No alias	component RPS16 of SSU proteome	0.17	Archaeplastida
Mp1g14290.1	No alias	component RPS16 of SSU proteome	0.18	Archaeplastida
Pp3c18_1350V3.1	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.14	Archaeplastida
Pp3c19_22410V3.1	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.17	Archaeplastida
Pp3c21_20630V3.1	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.15	Archaeplastida
Pp3c22_21090V3.1	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.14	Archaeplastida
Pp3c9_4180V3.1	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.15	Archaeplastida
Smo138369	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	Archaeplastida
Solyc01g068530.3.1	No alias	component RPS16 of SSU proteome	0.12	Archaeplastida
Solyc04g026100.1.1	No alias	component RPS16 of SSU proteome	0.15	Archaeplastida
Solyc05g005690.1.1	No alias	component RPS16 of SSU proteome	0.12	Archaeplastida
Zm00001e009230_P001	No alias	component RPS16 of SSU proteome	0.04	Archaeplastida
Zm00001e020865_P003	No alias	component RPS16 of SSU proteome	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Neighborhood
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008175	tRNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008176	tRNA (guanine-N7-)-methyltransferase activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022900	electron transport chain	IEP	Neighborhood
BP	GO:0022904	respiratory electron transport chain	IEP	Neighborhood
CC	GO:0032993	protein-DNA complex	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044815	DNA packaging complex	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000754	Ribosomal_S9	11	56

External Links

No external refs found!

MA_2656g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation