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MA_27152g0010


Description : Protein RAE1 OS=Arabidopsis thaliana (sp|q38942|rae1_arath : 208.0)


Gene families : OG0003816 (Archaeplastida) Phylogenetic Tree(s): OG0003816_tree ,
OG_05_0004359 (LandPlants) Phylogenetic Tree(s): OG_05_0004359_tree ,
OG_06_0004418 (SeedPlants) Phylogenetic Tree(s): OG_06_0004418_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_27152g0010
Cluster HCCA: Cluster_403

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00233620 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.03 Archaeplastida
Cpa|evm.model.tig00000215.115 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.02 Archaeplastida
Mp5g18210.1 No alias RAE1 scaffold nucleoporin of nuclear pore complex 0.04 Archaeplastida
Zm00001e020379_P001 No alias RAE1 scaffold nucleoporin of nuclear pore complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 29 55
IPR001680 WD40_repeat 113 139
No external refs found!