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  5. MA_276701g0010

MA_276701g0010


Description : transcription factor (MADS/AGL)


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_276701g0010
Cluster HCCA: Cluster_271

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00267050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00017p00244900 evm_27.TU.AmTr_v1... Floral homeotic protein PMADS 2 OS=Petunia hybrida 0.03 Archaeplastida
AMTR_s00047p00190220 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AT3G54340 AP3, ATAP3 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT4G18960 AG K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
GSVIVT01003858001 No alias Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01033067001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
Gb_12778 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os01g66030.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os04g23910.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_10256834g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_10289256g0010 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_141872g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_458668g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_69370g0010 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_7858089g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_95674g0010 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc01g080785.1.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc04g081000.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e023236_P005 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e038096_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!