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  5. MA_280399g0010

MA_280399g0010


Description : no hits & (original description: none)


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0000216 (SeedPlants) Phylogenetic Tree(s): OG_06_0000216_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_280399g0010
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00263220 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00019p00149380 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AMTR_s00044p00112360 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00056p00124480 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AT1G20823 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT1G22500 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT1G72200 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G27940 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT3G03550 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT3G20395 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT4G09100 No alias RING/U-box superfamily protein 0.04 Archaeplastida
GSVIVT01026703001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
Gb_14777 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_14778 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_20666 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_22087 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_32878 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_35043 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os01g60730.2 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os02g15110.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os06g50370.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10021g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_189618g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_229590g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_391590g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_55185g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_634100g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_78643g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_92400g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Mp1g19680.1 No alias NEP1-interacting protein-like 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c6_19030V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Smo109459 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Solyc02g038805.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc05g008640.1.1 No alias RHA2 signal transducer of abscisic acid perception 0.04 Archaeplastida
Solyc11g005290.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc12g094385.1.1 No alias E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e015477_P001 No alias E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e039314_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!