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  5. AT5G44840

AT5G44840


Description : Pectin lyase-like superfamily protein


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0017377 (LandPlants) Phylogenetic Tree(s): OG_05_0017377_tree ,
OG_06_0015125 (SeedPlants) Phylogenetic Tree(s): OG_06_0015125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G44840
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00197210 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
AMTR_s00066p00135670 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 Archaeplastida
AT1G05660 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G60590 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT1G70500 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
AT2G43880 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G44830 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
GSVIVT01008062001 No alias Polygalacturonase OS=Juniperus ashei 0.04 Archaeplastida
GSVIVT01017305001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01017307001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01032118001 No alias Cell wall.pectin.modification and... 0.04 Archaeplastida
GSVIVT01033303001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01033359001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01038241001 No alias Polygalacturonase OS=Prunus persica 0.05 Archaeplastida
GSVIVT01038243001 No alias Polygalacturonase OS=Prunus persica 0.03 Archaeplastida
LOC_Os01g44970.1 No alias polygalacturonase (PGX1) 0.03 Archaeplastida
MA_13282g0010 No alias Polygalacturonase OS=Actinidia deliciosa... 0.03 Archaeplastida
MA_9231294g0010 No alias No annotation 0.03 Archaeplastida
Mp3g21140.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Pp3c18_2210V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Smo111266 No alias Polygalacturonase OS=Chamaecyparis obtusa 0.02 Archaeplastida
Smo78038 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
Solyc04g025440.3.1 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida
Solyc08g014560.3.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Solyc12g019140.3.1 No alias Polygalacturonase OS=Prunus persica... 0.06 Archaeplastida
Solyc12g019220.1.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Solyc12g096730.3.1 No alias Polygalacturonase OS=Prunus persica... 0.02 Archaeplastida
Solyc12g096750.2.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Zm00001e036989_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0003840 obsolete gamma-glutamyltransferase activity IEP Neighborhood
MF GO:0005199 structural constituent of cell wall IEP Neighborhood
MF GO:0005345 purine nucleobase transmembrane transporter activity IEP Neighborhood
BP GO:0006863 purine nucleobase transport IEP Neighborhood
BP GO:0006885 regulation of pH IEP Neighborhood
BP GO:0007035 vacuolar acidification IEP Neighborhood
BP GO:0009698 phenylpropanoid metabolic process IEP Neighborhood
BP GO:0009699 phenylpropanoid biosynthetic process IEP Neighborhood
BP GO:0010023 proanthocyanidin biosynthetic process IEP Neighborhood
BP GO:0010231 maintenance of seed dormancy IEP Neighborhood
MF GO:0015205 nucleobase transmembrane transporter activity IEP Neighborhood
BP GO:0015851 nucleobase transport IEP Neighborhood
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
BP GO:0030004 cellular monovalent inorganic cation homeostasis IEP Neighborhood
MF GO:0030570 pectate lyase activity IEP Neighborhood
BP GO:0030641 regulation of cellular pH IEP Neighborhood
BP GO:0036294 cellular response to decreased oxygen levels IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
BP GO:0045851 pH reduction IEP Neighborhood
MF GO:0050284 sinapate 1-glucosyltransferase activity IEP Neighborhood
BP GO:0051452 intracellular pH reduction IEP Neighborhood
BP GO:0051453 regulation of intracellular pH IEP Neighborhood
BP GO:0055067 monovalent inorganic cation homeostasis IEP Neighborhood
BP GO:0060688 regulation of morphogenesis of a branching structure IEP Neighborhood
BP GO:0071453 cellular response to oxygen levels IEP Neighborhood
BP GO:0071456 cellular response to hypoxia IEP Neighborhood
BP GO:0097437 maintenance of dormancy IEP Neighborhood
BP GO:1900618 regulation of shoot system morphogenesis IEP Neighborhood
BP GO:1905428 regulation of plant organ formation IEP Neighborhood
BP GO:2000032 regulation of secondary shoot formation IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 55 366
No external refs found!