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  5. AT5G44980

AT5G44980


Description : F-box/RNI-like/FBD-like domains-containing protein


Gene families : OG0001957 (Archaeplastida) Phylogenetic Tree(s): OG0001957_tree ,
OG_05_0001277 (LandPlants) Phylogenetic Tree(s): OG_05_0001277_tree ,
OG_06_0000660 (SeedPlants) Phylogenetic Tree(s): OG_06_0000660_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G44980
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT1G32020 No alias F-box family protein 0.07 Archaeplastida
AT1G60400 No alias F-box/RNI-like superfamily protein 0.07 Archaeplastida
AT1G66640 No alias RNI-like superfamily protein 0.11 Archaeplastida
AT1G78760 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida
AT5G22590 No alias Leucine Rich Repeat protein family 0.04 Archaeplastida
AT5G22600 No alias FBD / Leucine Rich Repeat domains containing protein 0.04 Archaeplastida
AT5G22680 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.04 Archaeplastida
AT5G22720 No alias F-box/RNI-like superfamily protein 0.08 Archaeplastida
AT5G53840 No alias F-box/RNI-like/FBD-like domains-containing protein 0.1 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
MF GO:0005351 carbohydrate:proton symporter activity IEP Neighborhood
MF GO:0005402 carbohydrate:cation symporter activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005887 integral component of plasma membrane IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
MF GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity IEP Neighborhood
BP GO:0009555 pollen development IEP Neighborhood
BP GO:0010208 pollen wall assembly IEP Neighborhood
BP GO:0010584 pollen exine formation IEP Neighborhood
BP GO:0010927 cellular component assembly involved in morphogenesis IEP Neighborhood
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015114 phosphate ion transmembrane transporter activity IEP Neighborhood
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Neighborhood
MF GO:0015145 monosaccharide transmembrane transporter activity IEP Neighborhood
BP GO:0015749 monosaccharide transmembrane transport IEP Neighborhood
BP GO:0015858 nucleoside transport IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0018126 protein hydroxylation IEP Neighborhood
BP GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEP Neighborhood
BP GO:0019471 4-hydroxyproline metabolic process IEP Neighborhood
BP GO:0019511 peptidyl-proline hydroxylation IEP Neighborhood
CC GO:0022625 cytosolic large ribosomal subunit IEP Neighborhood
BP GO:0034219 carbohydrate transmembrane transport IEP Neighborhood
MF GO:0051119 sugar transmembrane transporter activity IEP Neighborhood
BP GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IEP Neighborhood
InterPro domains Description Start Stop
IPR006566 FBD 361 403
IPR001810 F-box_dom 6 42
No external refs found!