MA_29431g0010


Description : Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS=Arabidopsis thaliana (sp|q9lsq2|pp239_arath : 543.0)


Gene families : OG0011343 (Archaeplastida) Phylogenetic Tree(s): OG0011343_tree ,
OG_05_0011199 (LandPlants) Phylogenetic Tree(s): OG_05_0011199_tree ,
OG_06_0010465 (SeedPlants) Phylogenetic Tree(s): OG_06_0010465_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_29431g0010
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00184190 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_40070 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e002867_P004 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 319 348
IPR002885 Pentatricopeptide_repeat 486 519
IPR002885 Pentatricopeptide_repeat 350 399
IPR002885 Pentatricopeptide_repeat 595 644
IPR002885 Pentatricopeptide_repeat 665 713
IPR002885 Pentatricopeptide_repeat 527 574
IPR002885 Pentatricopeptide_repeat 739 783
No external refs found!