1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_294339g0010

MA_294339g0010


Description : Vacuolar protein sorting-associated protein 54, chloroplastic OS=Arabidopsis thaliana (sp|f4jt76|vps54_arath : 90.5)


Gene families : OG0002922 (Archaeplastida) Phylogenetic Tree(s): OG0002922_tree ,
OG_05_0005032 (LandPlants) Phylogenetic Tree(s): OG_05_0005032_tree ,
OG_06_0004597 (SeedPlants) Phylogenetic Tree(s): OG_06_0004597_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_294339g0010
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
AT4G19490 ATVPS54, VPS54 VPS54 0.03 Archaeplastida
LOC_Os04g13470.1 No alias GARP-specific component VPS54 of GARP/EARP... 0.03 Archaeplastida
Solyc02g030110.2.1 No alias GARP-specific component VPS54 of GARP/EARP... 0.02 Archaeplastida
Zm00001e008702_P001 No alias GARP-specific component VPS54 of GARP/EARP... 0.02 Archaeplastida
Zm00001e040599_P001 No alias GARP-specific component VPS54 of GARP/EARP... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0004143 diacylglycerol kinase activity IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005672 transcription factor TFIIA complex IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006644 phospholipid metabolic process IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!