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  5. MA_297123g0010

MA_297123g0010


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 483.0)


Gene families : OG0011413 (Archaeplastida) Phylogenetic Tree(s): OG0011413_tree ,
OG_05_0008543 (LandPlants) Phylogenetic Tree(s): OG_05_0008543_tree ,
OG_06_0002335 (SeedPlants) Phylogenetic Tree(s): OG_06_0002335_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_297123g0010
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
Gb_04381 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_07755 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_07756 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_28755 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.07 Archaeplastida
Gb_36142 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_41533 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006783 heme biosynthetic process IEP Neighborhood
BP GO:0006784 heme a biosynthetic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0042168 heme metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
BP GO:0046160 heme a metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051188 cofactor biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 501 549
IPR002885 Pentatricopeptide_repeat 135 183
IPR002885 Pentatricopeptide_repeat 400 447
IPR002885 Pentatricopeptide_repeat 268 315
IPR002885 Pentatricopeptide_repeat 211 236
IPR002885 Pentatricopeptide_repeat 575 599
IPR002885 Pentatricopeptide_repeat 343 368
IPR002885 Pentatricopeptide_repeat 370 396
No external refs found!