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  5. MA_29857g0020

MA_29857g0020


Description : organic cation transporter (OCT)


Gene families : OG0001017 (Archaeplastida) Phylogenetic Tree(s): OG0001017_tree ,
OG_05_0000761 (LandPlants) Phylogenetic Tree(s): OG_05_0000761_tree ,
OG_06_0000885 (SeedPlants) Phylogenetic Tree(s): OG_06_0000885_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_29857g0020
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00167630 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.MFS... 0.04 Archaeplastida
AMTR_s00032p00186620 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.MFS... 0.03 Archaeplastida
AT1G16390 3-Oct, ATOCT3 organic cation/carnitine transporter 3 0.04 Archaeplastida
AT1G79410 AtOCT5, 5-Oct organic cation/carnitine transporter5 0.04 Archaeplastida
Gb_11984 No alias organic cation transporter (OCT) 0.04 Archaeplastida
MA_6288g0010 No alias organic cation transporter (OCT) 0.04 Archaeplastida
Solyc12g017380.3.1 No alias organic cation transporter (OCT) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Neighborhood
CC GO:0005849 mRNA cleavage factor complex IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0045926 negative regulation of growth IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
InterPro domains Description Start Stop
IPR005828 MFS_sugar_transport-like 51 433
No external refs found!