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  5. MA_302333g0010

MA_302333g0010


Description : Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana (sp|q9lvq5|pp432_arath : 783.0)


Gene families : OG0000731 (Archaeplastida) Phylogenetic Tree(s): OG0000731_tree ,
OG_05_0000430 (LandPlants) Phylogenetic Tree(s): OG_05_0000430_tree ,
OG_06_0000220 (SeedPlants) Phylogenetic Tree(s): OG_06_0000220_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_302333g0010
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00203030 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.03 Archaeplastida
AMTR_s00059p00156460 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
AMTR_s00061p00202160 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g55840... 0.02 Archaeplastida
AMTR_s00080p00074320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g26680,... 0.02 Archaeplastida
AT1G11710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT1G19290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT2G02150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G26680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
AT5G01110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT5G40400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G55840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT5G59900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
GSVIVT01008360001 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.07 Archaeplastida
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01010244001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01025017001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01031896001 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.03 Archaeplastida
Gb_03188 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 Archaeplastida
Gb_03214 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.04 Archaeplastida
Gb_18022 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.06 Archaeplastida
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.06 Archaeplastida
Gb_28619 No alias Pentatricopeptide repeat-containing protein At1g11710,... 0.06 Archaeplastida
Gb_30066 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.03 Archaeplastida
LOC_Os12g21930.1 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.02 Archaeplastida
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.07 Archaeplastida
MA_774352g0010 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.04 Archaeplastida
Solyc02g021270.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc03g007390.4.1 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.03 Archaeplastida
Solyc10g051010.3.1 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.03 Archaeplastida
Solyc11g073270.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e035584_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 156 200
IPR002885 Pentatricopeptide_repeat 602 634
IPR002885 Pentatricopeptide_repeat 428 459
IPR002885 Pentatricopeptide_repeat 872 894
IPR002885 Pentatricopeptide_repeat 972 1019
IPR002885 Pentatricopeptide_repeat 291 340
IPR002885 Pentatricopeptide_repeat 797 844
IPR002885 Pentatricopeptide_repeat 221 267
IPR002885 Pentatricopeptide_repeat 641 690
IPR002885 Pentatricopeptide_repeat 711 760
IPR002885 Pentatricopeptide_repeat 361 410
IPR002885 Pentatricopeptide_repeat 537 585
IPR002885 Pentatricopeptide_repeat 912 951
IPR002885 Pentatricopeptide_repeat 466 515
No external refs found!