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  5. AT5G46190

AT5G46190


Description : RNA-binding KH domain-containing protein


Gene families : OG0000393 (Archaeplastida) Phylogenetic Tree(s): OG0000393_tree ,
OG_05_0010954 (LandPlants) Phylogenetic Tree(s): OG_05_0010954_tree ,
OG_06_0005388 (SeedPlants) Phylogenetic Tree(s): OG_06_0005388_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G46190
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00221750 evm_27.TU.AmTr_v1... RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
GSVIVT01012514001 No alias KH domain-containing protein HEN4 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_18830 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
LOC_Os06g23460.1 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
Solyc01g090480.4.1 No alias RNA-binding KH domain-containing protein PEPPER... 0.04 Archaeplastida
Solyc03g034200.3.1 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
CC GO:0000785 chromatin IEP Neighborhood
CC GO:0000790 nuclear chromatin IEP Neighborhood
CC GO:0000791 euchromatin IEP Neighborhood
CC GO:0000813 ESCRT I complex IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0005217 intracellular ligand-gated ion channel activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005719 nuclear euchromatin IEP Neighborhood
CC GO:0005819 spindle IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006342 chromatin silencing IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006874 cellular calcium ion homeostasis IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
BP GO:0009292 genetic transfer IEP Neighborhood
BP GO:0009294 DNA mediated transformation IEP Neighborhood
BP GO:0009566 fertilization IEP Neighborhood
BP GO:0009567 double fertilization forming a zygote and endosperm IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009911 positive regulation of flower development IEP Neighborhood
BP GO:0010084 specification of animal organ axis polarity IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0010928 regulation of auxin mediated signaling pathway IEP Neighborhood
BP GO:0010942 positive regulation of cell death IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031048 chromatin silencing by small RNA IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
MF GO:0031176 endo-1,4-beta-xylanase activity IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034052 positive regulation of plant-type hypersensitive response IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0035265 organ growth IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
CC GO:0036452 ESCRT complex IEP Neighborhood
BP GO:0040029 regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0043068 positive regulation of programmed cell death IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0044764 multi-organism cellular process IEP Neighborhood
BP GO:0045089 positive regulation of innate immune response IEP Neighborhood
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
BP GO:0051304 chromosome separation IEP Neighborhood
BP GO:0051307 meiotic chromosome separation IEP Neighborhood
BP GO:0055074 calcium ion homeostasis IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
MF GO:0070300 phosphatidic acid binding IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0097599 xylanase activity IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:1900618 regulation of shoot system morphogenesis IEP Neighborhood
BP GO:1901371 regulation of leaf morphogenesis IEP Neighborhood
BP GO:1905421 regulation of plant organ morphogenesis IEP Neighborhood
BP GO:1905428 regulation of plant organ formation IEP Neighborhood
BP GO:2000024 regulation of leaf development IEP Neighborhood
BP GO:2000025 regulation of leaf formation IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 152 222
IPR004088 KH_dom_type_1 320 371
IPR004088 KH_dom_type_1 46 96
IPR004088 KH_dom_type_1 575 638
IPR004088 KH_dom_type_1 402 467
No external refs found!