AT5G46680

Description : Pentatricopeptide repeat (PPR-like) superfamily protein

Gene families : OG0009145 (Archaeplastida) Phylogenetic Tree(s): OG0009145_tree ,
OG_05_0009030 (LandPlants) Phylogenetic Tree(s): OG_05_0009030_tree ,
OG_06_0006087 (SeedPlants) Phylogenetic Tree(s): OG_06_0006087_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G46680
Cluster	HCCA: Cluster_232

Target	Alias	Description	ECC score	Gene Family Method	Actions
LOC_Os02g55020.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.08	Archaeplastida
Zm00001e024516_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
BP	GO:0016556	mRNA modification	IEP	Neighborhood
BP	GO:0080156	mitochondrial mRNA modification	IEP	Neighborhood
BP	GO:1900864	mitochondrial RNA modification	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	152	200
IPR002885	Pentatricopeptide_repeat	221	262
IPR002885	Pentatricopeptide_repeat	46	95
IPR002885	Pentatricopeptide_repeat	293	340
IPR002885	Pentatricopeptide_repeat	396	418
IPR002885	Pentatricopeptide_repeat	263	288
IPR002885	Pentatricopeptide_repeat	113	143
IPR002885	Pentatricopeptide_repeat	358	391

External Links

No external refs found!