AT5G46910


Description : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein


Gene families : OG0003776 (Archaeplastida) Phylogenetic Tree(s): OG0003776_tree ,
OG_05_0004313 (LandPlants) Phylogenetic Tree(s): OG_05_0004313_tree ,
OG_06_0003809 (SeedPlants) Phylogenetic Tree(s): OG_06_0003809_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G46910
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01013083001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.08 Archaeplastida
LOC_Os02g46930.1 No alias transcription factor (JUMONJI) 0.05 Archaeplastida
Solyc08g076390.3.1 No alias histone demethylase (PKDM8). transcription factor (JUMONJI) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of transcription, DNA-templated RCA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated TAS Interproscan
BP GO:0010200 response to chitin IEP Interproscan
Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004707 MAP kinase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009225 nucleotide-sugar metabolic process IEP Neighborhood
BP GO:0009226 nucleotide-sugar biosynthetic process IEP Neighborhood
BP GO:0009755 hormone-mediated signaling pathway IEP Neighborhood
BP GO:0010253 UDP-rhamnose biosynthetic process IEP Neighborhood
MF GO:0010280 UDP-L-rhamnose synthase activity IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0033478 UDP-rhamnose metabolic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
InterPro domains Description Start Stop
IPR003347 JmjC_dom 280 403
IPR004198 Znf_C5HC2 500 551
IPR003349 JmjN 104 136
No external refs found!