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  5. MA_34795g0010

MA_34795g0010


Description : transcriptional co-repressor (LUG)


Gene families : OG0000691 (Archaeplastida) Phylogenetic Tree(s): OG0000691_tree ,
OG_05_0000885 (LandPlants) Phylogenetic Tree(s): OG_05_0000885_tree ,
OG_06_0001501 (SeedPlants) Phylogenetic Tree(s): OG_06_0001501_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_34795g0010
Cluster HCCA: Cluster_382

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00167320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional repression.LUG... 0.02 Archaeplastida
AMTR_s00122p00094620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional repression.LUG... 0.05 Archaeplastida
GSVIVT01035790001 No alias RNA biosynthesis.transcriptional repression.LUG... 0.03 Archaeplastida
GSVIVT01035791001 No alias RNA biosynthesis.transcriptional repression.LUG... 0.03 Archaeplastida
GSVIVT01035793001 No alias RNA biosynthesis.transcriptional repression.LUG... 0.02 Archaeplastida
Gb_02946 No alias transcriptional co-repressor (LUG) 0.04 Archaeplastida
Mp1g15050.1 No alias transcriptional co-repressor (LUG) 0.02 Archaeplastida
Mp1g15060.1 No alias transcriptional co-repressor (LUG) 0.02 Archaeplastida
Pp3c1_3700V3.1 No alias LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.02 Archaeplastida
Pp3c1_3770V3.1 No alias LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.01 Archaeplastida
Pp3c2_31650V3.1 No alias LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.05 Archaeplastida
Zm00001e020658_P005 No alias transcriptional co-repressor (LUG) 0.05 Archaeplastida
Zm00001e027845_P004 No alias transcriptional co-repressor (LUG) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 299 331
IPR001680 WD40_repeat 381 415
IPR001680 WD40_repeat 340 373
IPR001680 WD40_repeat 548 582
IPR006692 Coatomer_WD-assoc_reg 436 503
No external refs found!