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  5. MA_3612g0010

MA_3612g0010


Description : Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana (sp|q9lfl5|pp390_arath : 592.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000075 (LandPlants) Phylogenetic Tree(s): OG_05_0000075_tree ,
OG_06_0000277 (SeedPlants) Phylogenetic Tree(s): OG_06_0000277_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_3612g0010
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00014p00257090 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
AMTR_s00098p00155650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39350... 0.03 Archaeplastida
AT1G13410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT2G22070 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Archaeplastida
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G21470 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
AT3G23330 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G21065 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G38010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
AT5G46460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
GSVIVT01000072001 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.05 Archaeplastida
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01003804001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
GSVIVT01007974001 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.03 Archaeplastida
GSVIVT01008715001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.05 Archaeplastida
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.03 Archaeplastida
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.04 Archaeplastida
GSVIVT01009866001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
GSVIVT01010125001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01010647001 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.05 Archaeplastida
GSVIVT01010898001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.06 Archaeplastida
GSVIVT01011479001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.04 Archaeplastida
GSVIVT01012174001 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.08 Archaeplastida
GSVIVT01016860001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
GSVIVT01016874001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.05 Archaeplastida
GSVIVT01017989001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01019116001 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
GSVIVT01020929001 No alias Pentatricopeptide repeat-containing protein At1g04840... 0.04 Archaeplastida
GSVIVT01021774001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.04 Archaeplastida
GSVIVT01024233001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
GSVIVT01024588001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.05 Archaeplastida
GSVIVT01026881001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.04 Archaeplastida
GSVIVT01027504001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
GSVIVT01030054001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.07 Archaeplastida
GSVIVT01031265001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.1 Archaeplastida
GSVIVT01033004001 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.04 Archaeplastida
GSVIVT01033863001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01036757001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
GSVIVT01036975001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
Gb_00522 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_01226 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_02911 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_03474 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_04091 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_06115 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_06272 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_07872 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_09409 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_09797 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
Gb_10709 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_10903 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_12722 No alias RNA editing factor (MEF9) 0.03 Archaeplastida
Gb_16070 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_17095 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_18600 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_20837 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_21064 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_21437 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_22477 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
Gb_22658 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_24114 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_25581 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_25737 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Gb_27521 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_27797 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_28030 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
Gb_28343 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_28770 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_28787 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Archaeplastida
Gb_29768 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.04 Archaeplastida
Gb_29872 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.06 Archaeplastida
Gb_30146 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Gb_30918 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_32447 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.04 Archaeplastida
Gb_34963 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_35599 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_38158 No alias OTP70 plastidial RNA splicing factor 0.05 Archaeplastida
Gb_38441 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Gb_39300 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Gb_40381 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_40432 No alias RNA editing factor (MEF19) 0.03 Archaeplastida
Gb_40437 No alias RNA editing factor (MEF3) 0.06 Archaeplastida
LOC_Os01g46230.1 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
LOC_Os01g60000.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.03 Archaeplastida
LOC_Os02g50280.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
LOC_Os03g04390.1 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 Archaeplastida
LOC_Os03g56400.1 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
LOC_Os04g09530.1 No alias RNA editing factor (BLX) 0.03 Archaeplastida
LOC_Os04g35650.1 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.04 Archaeplastida
LOC_Os04g39410.1 No alias RNA editing factor (OTP86) 0.02 Archaeplastida
LOC_Os04g41120.1 No alias Pentatricopeptide repeat-containing protein At4g38010... 0.04 Archaeplastida
LOC_Os08g25280.1 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 Archaeplastida
LOC_Os10g34720.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os10g40920.1 No alias RNA editing factor (MEF13) 0.02 Archaeplastida
LOC_Os11g37330.2 No alias RNA editing factor (MEF11) 0.03 Archaeplastida
MA_139163g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_482767g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
MA_615077g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
MA_65500g0010 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.05 Archaeplastida
MA_71104g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
MA_8210920g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
MA_86894g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_98224g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Smo108652 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Smo111075 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Smo124576 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 Archaeplastida
Smo126797 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Smo128850 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Smo134581 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Smo34426 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.03 Archaeplastida
Smo399 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 Archaeplastida
Smo52147 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Solyc06g053850.4.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Solyc06g066080.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.05 Archaeplastida
Solyc07g008480.3.1 No alias Pentatricopeptide repeat-containing protein At3g14730... 0.02 Archaeplastida
Zm00001e000335_P001 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Zm00001e001007_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e001038_P001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.05 Archaeplastida
Zm00001e001918_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
Zm00001e002234_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e003562_P001 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.05 Archaeplastida
Zm00001e006389_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e007042_P001 No alias RNA editing factor (AEF1) 0.02 Archaeplastida
Zm00001e011748_P001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Zm00001e013116_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e015799_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e018346_P001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.05 Archaeplastida
Zm00001e018597_P001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.02 Archaeplastida
Zm00001e019482_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.04 Archaeplastida
Zm00001e023333_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e023504_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Zm00001e027978_P001 No alias RNA editing factor (MEF1) 0.02 Archaeplastida
Zm00001e031660_P001 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.05 Archaeplastida
Zm00001e032242_P001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.03 Archaeplastida
Zm00001e032485_P001 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.03 Archaeplastida
Zm00001e035616_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e036301_P001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.02 Archaeplastida
Zm00001e038850_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Zm00001e040418_P001 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.04 Archaeplastida
Zm00001e040920_P001 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.06 Archaeplastida
Zm00001e041893_P001 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 460 483
IPR002885 Pentatricopeptide_repeat 58 82
IPR002885 Pentatricopeptide_repeat 325 354
IPR002885 Pentatricopeptide_repeat 627 654
IPR002885 Pentatricopeptide_repeat 560 585
IPR002885 Pentatricopeptide_repeat 253 300
IPR002885 Pentatricopeptide_repeat 150 199
IPR002885 Pentatricopeptide_repeat 486 534
IPR002885 Pentatricopeptide_repeat 384 432
IPR032867 DYW_dom 659 783
No external refs found!