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  5. AT5G47960

AT5G47960 (ATRABA4C, RABA4C, SMG1)


Aliases : ATRABA4C, RABA4C, SMG1

Description : RAB GTPase homolog A4C


Gene families : OG0000173 (Archaeplastida) Phylogenetic Tree(s): OG0000173_tree ,
OG_05_0001287 (LandPlants) Phylogenetic Tree(s): OG_05_0001287_tree ,
OG_06_0001319 (SeedPlants) Phylogenetic Tree(s): OG_06_0001319_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G47960
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AT3G12160 RABA4D, ATRABA4D RAB GTPase homolog A4D 0.03 Archaeplastida
Cpa|evm.model.tig00020961.97 No alias Vesicle trafficking.regulation of membrane tethering and... 0.02 Archaeplastida
Cre03.g189250 No alias Vesicle trafficking.regulation of membrane tethering and... 0.02 Archaeplastida
GSVIVT01014250001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
LOC_Os01g47730.1 No alias A-class RAB GTPase 0.02 Archaeplastida
LOC_Os03g62600.1 No alias A-class RAB GTPase 0.06 Archaeplastida
LOC_Os09g10940.1 No alias A-class RAB GTPase 0.03 Archaeplastida
Solyc03g006270.3.1 No alias A-class RAB GTPase 0.04 Archaeplastida
Zm00001e009700_P001 No alias A-class RAB GTPase 0.03 Archaeplastida
Zm00001e020213_P001 No alias A-class RAB GTPase 0.06 Archaeplastida
Zm00001e030680_P001 No alias A-class RAB GTPase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding ISS Interproscan
CC GO:0005794 Golgi apparatus ISM Interproscan
BP GO:0016192 vesicle-mediated transport RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004683 calmodulin-dependent protein kinase activity IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
BP GO:0009404 toxin metabolic process IEP Neighborhood
BP GO:0009407 toxin catabolic process IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010200 response to chitin IEP Neighborhood
BP GO:0010243 response to organonitrogen compound IEP Neighborhood
BP GO:0010583 response to cyclopentenone IEP Neighborhood
BP GO:0014070 response to organic cyclic compound IEP Neighborhood
BP GO:0098754 detoxification IEP Neighborhood
InterPro domains Description Start Stop
IPR001806 Small_GTPase 17 177
No external refs found!