AT5G48170 (SLY2)

Aliases : SLY2

Description : F-box family protein

Gene families : OG0001807 (Archaeplastida) Phylogenetic Tree(s): OG0001807_tree ,
OG_05_0001273 (LandPlants) Phylogenetic Tree(s): OG_05_0001273_tree ,
OG_06_0000732 (SeedPlants) Phylogenetic Tree(s): OG_06_0000732_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G48170
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method	Actions
MA_10432992g0010	No alias	SLY-type gibberellin signal transducer. component F-box...	0.03	Archaeplastida
Zm00001e022823_P002	No alias	SLY-type gibberellin signal transducer. component F-box...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009740	gibberellic acid mediated signaling pathway	IMP	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	IMP	Interproscan
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010476	gibberellin mediated signaling pathway	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
CC	GO:0019005	SCF ubiquitin ligase complex	IPI	Interproscan
BP	GO:0023051	regulation of signaling	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048831	regulation of shoot system development	IGI	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0001558	regulation of cell growth	IEP	Neighborhood
BP	GO:0003002	regionalization	IEP	Neighborhood
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0004140	dephospho-CoA kinase activity	IEP	Neighborhood
MF	GO:0004702	obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity	IEP	Neighborhood
MF	GO:0004789	thiamine-phosphate diphosphorylase activity	IEP	Neighborhood
MF	GO:0004798	thymidylate kinase activity	IEP	Neighborhood
CC	GO:0005654	nucleoplasm	IEP	Neighborhood
CC	GO:0005811	lipid droplet	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006772	thiamine metabolic process	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
MF	GO:0008265	Mo-molybdopterin cofactor sulfurase activity	IEP	Neighborhood
BP	GO:0008356	asymmetric cell division	IEP	Neighborhood
MF	GO:0008902	hydroxymethylpyrimidine kinase activity	IEP	Neighborhood
MF	GO:0008970	phospholipase A1 activity	IEP	Neighborhood
MF	GO:0008972	phosphomethylpyrimidine kinase activity	IEP	Neighborhood
BP	GO:0009228	thiamine biosynthetic process	IEP	Neighborhood
BP	GO:0009554	megasporogenesis	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0009629	response to gravity	IEP	Neighborhood
BP	GO:0009630	gravitropism	IEP	Neighborhood
BP	GO:0009647	skotomorphogenesis	IEP	Neighborhood
BP	GO:0009956	radial pattern formation	IEP	Neighborhood
BP	GO:0010051	xylem and phloem pattern formation	IEP	Neighborhood
BP	GO:0010058	regulation of atrichoblast fate specification	IEP	Neighborhood
BP	GO:0010059	positive regulation of atrichoblast fate specification	IEP	Neighborhood
BP	GO:0010061	regulation of trichoblast fate specification	IEP	Neighborhood
BP	GO:0010063	positive regulation of trichoblast fate specification	IEP	Neighborhood
BP	GO:0010071	root meristem specification	IEP	Neighborhood
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	Neighborhood
BP	GO:0010453	regulation of cell fate commitment	IEP	Neighborhood
BP	GO:0010455	positive regulation of cell fate commitment	IEP	Neighborhood
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	Neighborhood
BP	GO:0015936	coenzyme A metabolic process	IEP	Neighborhood
BP	GO:0015937	coenzyme A biosynthetic process	IEP	Neighborhood
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Neighborhood
MF	GO:0016783	sulfurtransferase activity	IEP	Neighborhood
MF	GO:0017077	oxidative phosphorylation uncoupler activity	IEP	Neighborhood
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Neighborhood
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0030308	negative regulation of cell growth	IEP	Neighborhood
BP	GO:0032507	maintenance of protein location in cell	IEP	Neighborhood
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
BP	GO:0042023	DNA endoreduplication	IEP	Neighborhood
BP	GO:0042343	indole glucosinolate metabolic process	IEP	Neighborhood
BP	GO:0042659	regulation of cell fate specification	IEP	Neighborhood
BP	GO:0042660	positive regulation of cell fate specification	IEP	Neighborhood
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0044786	cell cycle DNA replication	IEP	Neighborhood
BP	GO:0045185	maintenance of protein location	IEP	Neighborhood
BP	GO:0045597	positive regulation of cell differentiation	IEP	Neighborhood
BP	GO:0045736	negative regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0045926	negative regulation of growth	IEP	Neighborhood
MF	GO:0047714	galactolipase activity	IEP	Neighborhood
BP	GO:0048367	shoot system development	IEP	Neighborhood
BP	GO:0048731	system development	IEP	Neighborhood
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Neighborhood
BP	GO:0051094	positive regulation of developmental process	IEP	Neighborhood
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	Neighborhood
BP	GO:0051457	maintenance of protein location in nucleus	IEP	Neighborhood
BP	GO:0051651	maintenance of location in cell	IEP	Neighborhood
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Neighborhood
BP	GO:1903888	regulation of plant epidermal cell differentiation	IEP	Neighborhood
BP	GO:1903890	positive regulation of plant epidermal cell differentiation	IEP	Neighborhood
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Neighborhood
BP	GO:1904030	negative regulation of cyclin-dependent protein kinase activity	IEP	Neighborhood
BP	GO:1905421	regulation of plant organ morphogenesis	IEP	Neighborhood
BP	GO:1905423	positive regulation of plant organ morphogenesis	IEP	Neighborhood
BP	GO:2000038	regulation of stomatal complex development	IEP	Neighborhood
BP	GO:2000067	regulation of root morphogenesis	IEP	Neighborhood
BP	GO:2000123	positive regulation of stomatal complex development	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001810	F-box_dom	33	73

External Links

No external refs found!

AT5G48170 (SLY2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation