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  5. MA_369530g0010

MA_369530g0010


Description : Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana (sp|q9fjr0|rent1_arath : 360.0)


Gene families : OG0001972 (Archaeplastida) Phylogenetic Tree(s): OG0001972_tree ,
OG_05_0003008 (LandPlants) Phylogenetic Tree(s): OG_05_0003008_tree ,
OG_06_0003782 (SeedPlants) Phylogenetic Tree(s): OG_06_0003782_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_369530g0010
Cluster HCCA: Cluster_515

Target Alias Description ECC score Gene Family Method Actions
Gb_22830 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.02 Archaeplastida
LOC_Os07g31340.1 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.03 Archaeplastida
Pp3c23_9370V3.1 No alias RNA helicase, putative 0.02 Archaeplastida
Solyc08g007110.4.1 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.04 Archaeplastida
Solyc08g077420.3.1 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.02 Archaeplastida
Zm00001e010427_P002 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.02 Archaeplastida
Zm00001e035036_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!