MA_38141g0010


Description : component RPL9 of LSU proteome component


Gene families : OG0002651 (Archaeplastida) Phylogenetic Tree(s): OG0002651_tree ,
OG_05_0002585 (LandPlants) Phylogenetic Tree(s): OG_05_0002585_tree ,
OG_06_0002821 (SeedPlants) Phylogenetic Tree(s): OG_06_0002821_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_38141g0010
Cluster HCCA: Cluster_208

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00131950 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
AMTR_s00048p00062300 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
AT1G33120 No alias Ribosomal protein L6 family 0.05 Archaeplastida
AT1G33140 PGY2 Ribosomal protein L6 family 0.11 Archaeplastida
AT4G10450 No alias Ribosomal protein L6 family 0.05 Archaeplastida
Cpa|evm.model.tig00001532.12 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
Cre12.g494050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
GSVIVT01016795001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
GSVIVT01038670001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
LOC_Os02g01332.1 No alias component RPL9 of LSU proteome component 0.05 Archaeplastida
LOC_Os09g31180.1 No alias component RPL9 of LSU proteome component 0.14 Archaeplastida
Mp4g24070.1 No alias component RPL9 of LSU proteome component 0.17 Archaeplastida
Pp3c10_8500V3.1 No alias Ribosomal protein L6 family 0.11 Archaeplastida
Pp3c14_8600V3.1 No alias Ribosomal protein L6 family 0.12 Archaeplastida
Pp3c16_20070V3.1 No alias Ribosomal protein L6 family 0.07 Archaeplastida
Pp3c27_8190V3.1 No alias Ribosomal protein L6 family 0.14 Archaeplastida
Smo269009 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
Solyc06g073310.3.1 No alias component RPL9 of LSU proteome component 0.14 Archaeplastida
Solyc08g014550.3.1 No alias component RPL9 of LSU proteome component 0.12 Archaeplastida
Solyc12g096700.2.1 No alias component RPL9 of LSU proteome component 0.19 Archaeplastida
Zm00001e025404_P001 No alias component RPL9 of LSU proteome component 0.05 Archaeplastida
Zm00001e029810_P003 No alias component RPL9 of LSU proteome component 0.12 Archaeplastida
Zm00001e036699_P002 No alias component RPL9 of LSU proteome component 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Neighborhood
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
BP GO:0006751 glutathione catabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016842 amidine-lyase activity IEP Neighborhood
CC GO:0030008 TRAPP complex IEP Neighborhood
CC GO:0035145 exon-exon junction complex IEP Neighborhood
BP GO:0042219 cellular modified amino acid catabolic process IEP Neighborhood
BP GO:0043171 peptide catabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044273 sulfur compound catabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 12 86
IPR020040 Ribosomal_L6_a/b-dom 98 177
No external refs found!