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  5. MA_385322g0010

MA_385322g0010


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 396.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0015200 (LandPlants) Phylogenetic Tree(s): OG_05_0015200_tree ,
OG_06_0012720 (SeedPlants) Phylogenetic Tree(s): OG_06_0012720_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_385322g0010
Cluster HCCA: Cluster_251

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00257020 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.02 Archaeplastida
AMTR_s00016p00166520 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00084p00089150 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Archaeplastida
AT1G05750 PDE247, CLB19 Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT1G16480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT1G74600 No alias pentatricopeptide (PPR) repeat-containing protein 0.01 Archaeplastida
AT3G20730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G47840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Cre08.g358250 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.04 Archaeplastida
GSVIVT01013023001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.04 Archaeplastida
Gb_02060 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_03693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_06568 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
Gb_07442 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_07570 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_08518 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_10709 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_11389 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_11688 No alias OTP70 plastidial RNA splicing factor 0.02 Archaeplastida
Gb_12551 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_12555 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_13227 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_13303 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
Gb_14445 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_14867 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_15235 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_16366 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_18436 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_20504 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_21064 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_23084 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_23267 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.07 Archaeplastida
Gb_25359 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_25737 No alias RNA editing factor (MEF1) 0.04 Archaeplastida
Gb_25869 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.02 Archaeplastida
Gb_26311 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_26340 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.12 Archaeplastida
Gb_28764 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Gb_29534 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_30991 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_33719 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_36085 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_36177 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida
Gb_36178 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_39702 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_40766 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.11 Archaeplastida
LOC_Os07g31000.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Smo107260 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.03 Archaeplastida
Smo118230 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
Smo173139 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 Archaeplastida
Smo92008 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
Smo92610 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.02 Archaeplastida
Solyc02g069500.1.1 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 Archaeplastida
Solyc04g076800.3.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 Archaeplastida
Solyc05g013200.1.1 No alias RNA editing factor (OTP85) 0.02 Archaeplastida
Solyc10g005090.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e007133_P001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Zm00001e015517_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e023289_P001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 95 120
IPR002885 Pentatricopeptide_repeat 22 69
IPR032867 DYW_dom 195 319
No external refs found!