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  5. MA_38893g0010

MA_38893g0010


Description : Transportin-1 OS=Oryza sativa subsp. indica (sp|b8arw2|tnpo1_orysi : 327.0)


Gene families : OG0004680 (Archaeplastida) Phylogenetic Tree(s): OG0004680_tree ,
OG_05_0004644 (LandPlants) Phylogenetic Tree(s): OG_05_0004644_tree ,
OG_06_0006602 (SeedPlants) Phylogenetic Tree(s): OG_06_0006602_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_38893g0010
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AT2G16950 ATTRN1, TRN1 transportin 1 0.07 Archaeplastida
Cre12.g520550 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.05 Archaeplastida
GSVIVT01023974001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.1 Archaeplastida
Gb_11406 No alias IMB2 nucleocytoplasmic import karyopherin 0.06 Archaeplastida
Mp7g05740.1 No alias IMB2 nucleocytoplasmic import karyopherin 0.04 Archaeplastida
Pp3c16_4650V3.1 No alias transportin 1 0.05 Archaeplastida
Pp3c27_5090V3.1 No alias transportin 1 0.05 Archaeplastida
Pp3c6_18200V3.1 No alias transportin 1 0.05 Archaeplastida
Smo175519 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.03 Archaeplastida
Solyc01g111780.4.1 No alias IMB2 nucleocytoplasmic import karyopherin 0.09 Archaeplastida
Zm00001e007506_P002 No alias IMB2 nucleocytoplasmic import karyopherin 0.07 Archaeplastida
Zm00001e042007_P001 No alias IMB2 nucleocytoplasmic import karyopherin 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
MF GO:0008536 Ran GTPase binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006013 mannose metabolic process IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001494 Importin-beta_N 34 100
No external refs found!