AT5G48910 (LPA66)

Aliases : LPA66

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G48910
Cluster	HCCA: Cluster_149

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00263110	No alias	Pentatricopeptide repeat-containing protein At1g03540...	0.03	Archaeplastida
AMTR_s00011p00266560	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
AMTR_s00024p00225420	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
AMTR_s00031p00067070	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.03	Archaeplastida
AMTR_s00039p00210570	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
AMTR_s00049p00210350	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
AMTR_s00051p00085060	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g16610...	0.04	Archaeplastida
AMTR_s00053p00090700	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g13880...	0.03	Archaeplastida
AMTR_s00056p00185560	No alias	RNA processing.organelle machineries.RNA...	0.04	Archaeplastida
AMTR_s00061p00127300	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g12770...	0.04	Archaeplastida
AMTR_s00066p00131520	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
AMTR_s00077p00031710	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g27610...	0.05	Archaeplastida
AT1G18485	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.05	Archaeplastida
Cpa\|evm.model.tig00001038.5	No alias	No description available	0.01	Archaeplastida
Cre08.g358250	No alias	Pentatricopeptide repeat-containing protein At5g02860...	0.03	Archaeplastida
GSVIVT01005260001	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.02	Archaeplastida
GSVIVT01008965001	No alias	Pentatricopeptide repeat-containing protein At4g18520,...	0.03	Archaeplastida
GSVIVT01009789001	No alias	Pentatricopeptide repeat-containing protein At1g19720...	0.04	Archaeplastida
GSVIVT01011479001	No alias	Pentatricopeptide repeat-containing protein At3g29230...	0.05	Archaeplastida
GSVIVT01015318001	No alias	Pentatricopeptide repeat-containing protein At1g77170,...	0.04	Archaeplastida
GSVIVT01017075001	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.05	Archaeplastida
GSVIVT01017365001	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
GSVIVT01017823001	No alias	Pentatricopeptide repeat-containing protein At2g36980,...	0.02	Archaeplastida
GSVIVT01018597001	No alias	RNA processing.organelle machineries.RNA...	0.05	Archaeplastida
GSVIVT01020091001	No alias	RNA processing.organelle machineries.RNA...	0.04	Archaeplastida
GSVIVT01021756001	No alias	Pentatricopeptide repeat-containing protein At4g21300...	0.03	Archaeplastida
GSVIVT01023971001	No alias	Pentatricopeptide repeat-containing protein At4g35130,...	0.05	Archaeplastida
GSVIVT01027077001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
GSVIVT01029382001	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
GSVIVT01032721001	No alias	Pentatricopeptide repeat-containing protein At3g53360,...	0.05	Archaeplastida
GSVIVT01033190001	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.04	Archaeplastida
GSVIVT01033389001	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
GSVIVT01036142001	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.05	Archaeplastida
GSVIVT01036207001	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.06	Archaeplastida
Gb_01366	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Gb_08619	No alias	RNA editing factor (MEF19)	0.04	Archaeplastida
Gb_23678	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.04	Archaeplastida
Gb_25129	No alias	RNA editing factor (ECD1)	0.05	Archaeplastida
Gb_26526	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.05	Archaeplastida
Gb_36806	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.09	Archaeplastida
LOC_Os01g62910.1	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.03	Archaeplastida
LOC_Os03g44210.2	No alias	RNA editing factor (SEL1/PDM1)	0.03	Archaeplastida
LOC_Os09g24680.1	No alias	Pentatricopeptide repeat-containing protein At1g74600,...	0.04	Archaeplastida
LOC_Os10g33730.1	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
LOC_Os11g10740.1	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.05	Archaeplastida
MA_10431227g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
MA_123466g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.05	Archaeplastida
MA_20622g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_20746g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_381817g0020	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.05	Archaeplastida
MA_4438g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_72886g0010	No alias	Pentatricopeptide repeat-containing protein At5g50390,...	0.02	Archaeplastida
MA_9258g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_94165g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_9526611g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
Pp3c24_8560V3.1	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.05	Archaeplastida
Smo181046	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Smo82255	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.04	Archaeplastida
Smo90123	No alias	Pentatricopeptide repeat-containing protein At3g22690...	0.02	Archaeplastida
Solyc01g098150.3.1	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.04	Archaeplastida
Solyc02g088470.1.1	No alias	Pentatricopeptide repeat-containing protein At3g29230...	0.05	Archaeplastida
Solyc03g119950.1.1	No alias	RNA editing factor (ECB2/VAC1)	0.05	Archaeplastida
Solyc04g076800.3.1	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.02	Archaeplastida
Solyc08g013850.1.1	No alias	RNA editing factor (CRR21)	0.03	Archaeplastida
Solyc12g096510.3.1	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.1	Archaeplastida
Zm00001e000301_P001	No alias	Pentatricopeptide repeat-containing protein At4g35130,...	0.04	Archaeplastida
Zm00001e001038_P001	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.04	Archaeplastida
Zm00001e003284_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Zm00001e009339_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e011417_P001	No alias	RNA editing factor (CRR28)	0.09	Archaeplastida
Zm00001e015440_P001	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.05	Archaeplastida
Zm00001e021457_P001	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.02	Archaeplastida
Zm00001e023498_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Zm00001e023800_P003	No alias	RNA editing factor (CLB19)	0.03	Archaeplastida
Zm00001e029186_P001	No alias	Pentatricopeptide repeat-containing protein At1g19720...	0.03	Archaeplastida
Zm00001e041048_P001	No alias	RNA editing factor (OTP86)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0007020	microtubule nucleation	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IMP	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000023	maltose metabolic process	IEP	Neighborhood
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0000373	Group II intron splicing	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003727	single-stranded RNA binding	IEP	Neighborhood
MF	GO:0003729	mRNA binding	IEP	Neighborhood
MF	GO:0003777	microtubule motor activity	IEP	Neighborhood
MF	GO:0004161	dimethylallyltranstransferase activity	IEP	Neighborhood
MF	GO:0004311	farnesyltranstransferase activity	IEP	Neighborhood
MF	GO:0004659	prenyltransferase activity	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0005982	starch metabolic process	IEP	Neighborhood
BP	GO:0005984	disaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
BP	GO:0007623	circadian rhythm	IEP	Neighborhood
MF	GO:0008187	poly-pyrimidine tract binding	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
MF	GO:0008266	poly(U) RNA binding	IEP	Neighborhood
BP	GO:0009250	glucan biosynthetic process	IEP	Neighborhood
BP	GO:0009311	oligosaccharide metabolic process	IEP	Neighborhood
CC	GO:0009513	etioplast	IEP	Neighborhood
CC	GO:0009526	plastid envelope	IEP	Neighborhood
CC	GO:0009527	plastid outer membrane	IEP	Neighborhood
CC	GO:0009707	chloroplast outer membrane	IEP	Neighborhood
BP	GO:0009903	chloroplast avoidance movement	IEP	Neighborhood
CC	GO:0009941	chloroplast envelope	IEP	Neighborhood
BP	GO:0010304	PSII associated light-harvesting complex II catabolic process	IEP	Neighborhood
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0019252	starch biosynthetic process	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
CC	GO:0031969	chloroplast membrane	IEP	Neighborhood
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044257	cellular protein catabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
CC	GO:0044434	chloroplast part	IEP	Neighborhood
CC	GO:0044435	plastid part	IEP	Neighborhood
BP	GO:0045036	protein targeting to chloroplast	IEP	Neighborhood
BP	GO:0048316	seed development	IEP	Neighborhood
BP	GO:0048511	rhythmic process	IEP	Neighborhood
BP	GO:0048608	reproductive structure development	IEP	Neighborhood
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	Neighborhood
BP	GO:0072598	protein localization to chloroplast	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR032867	DYW_dom	512	636
IPR002885	Pentatricopeptide_repeat	413	437
IPR002885	Pentatricopeptide_repeat	480	508
IPR002885	Pentatricopeptide_repeat	339	386
IPR002885	Pentatricopeptide_repeat	238	281

External Links

No external refs found!

AT5G48910 (LPA66)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation