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  5. MA_39508g0010

MA_39508g0010


Description : scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex


Gene families : OG0003440 (Archaeplastida) Phylogenetic Tree(s): OG0003440_tree ,
OG_05_0004308 (LandPlants) Phylogenetic Tree(s): OG_05_0004308_tree ,
OG_06_0004022 (SeedPlants) Phylogenetic Tree(s): OG_06_0004022_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_39508g0010
Cluster HCCA: Cluster_437

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00182220 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.04 Archaeplastida
AT2G39340 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.03 Archaeplastida
Cpa|evm.model.tig00020816.8 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 Archaeplastida
GSVIVT01032627001 No alias RNA processing.messenger ribonucleoprotein particle... 0.04 Archaeplastida
Gb_20470 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.03 Archaeplastida
LOC_Os01g61930.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.02 Archaeplastida
Mp8g06380.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.02 Archaeplastida
Pp3c1_11990V3.1 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.02 Archaeplastida
Pp3c2_24860V3.1 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.03 Archaeplastida
Solyc05g054910.3.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.05 Archaeplastida
Zm00001e027254_P001 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.05 Archaeplastida
Zm00001e031846_P004 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
InterPro domains Description Start Stop
IPR005062 SAC3/GANP/THP3 775 845
No external refs found!