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  5. MA_41001g0010

MA_41001g0010


Description : Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana (sp|o22283|rhc2a_arath : 97.1)


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0000046 (LandPlants) Phylogenetic Tree(s): OG_05_0000046_tree ,
OG_06_0003606 (SeedPlants) Phylogenetic Tree(s): OG_06_0003606_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_41001g0010
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
AT1G18770 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT1G26800 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT1G55530 No alias RING/U-box superfamily protein 0.02 Archaeplastida
LOC_Os05g01940.1 No alias elicitor peptide precursor (proPEP) 0.02 Archaeplastida
LOC_Os09g17610.1 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_50561g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c1_42450V3.1 No alias RING/U-box superfamily protein 0.01 Archaeplastida
Pp3c2_5960V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Zm00001e038273_P001 No alias E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 115 157
No external refs found!