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  5. MA_41907g0010

MA_41907g0010


Description : Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana (sp|q9sgh2|mbd9_arath : 479.0)


Gene families : OG0005252 (Archaeplastida) Phylogenetic Tree(s): OG0005252_tree ,
OG_05_0005859 (LandPlants) Phylogenetic Tree(s): OG_05_0005859_tree ,
OG_06_0008214 (SeedPlants) Phylogenetic Tree(s): OG_06_0008214_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_41907g0010
Cluster HCCA: Cluster_380

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267510 evm_27.TU.AmTr_v1... Methyl-CpG-binding domain-containing protein 9... 0.05 Archaeplastida
AT3G01460 ATMBD9, MBD9 methyl-CPG-binding domain 9 0.1 Archaeplastida
Cpa|evm.model.tig00001384.4 No alias No description available 0.02 Archaeplastida
GSVIVT01020232001 No alias Methyl-CpG-binding domain-containing protein 9... 0.03 Archaeplastida
Gb_22434 No alias Methyl-CpG-binding domain-containing protein 9... 0.04 Archaeplastida
Mp8g01420.1 No alias Methyl-CpG-binding domain-containing protein 9... 0.08 Archaeplastida
Pp3c1_860V3.1 No alias methyl-CPG-binding domain 9 0.03 Archaeplastida
Pp3c2_35750V3.1 No alias methyl-CPG-binding domain 9 0.03 Archaeplastida
Pp3c6_8120V3.1 No alias methyl-CPG-binding domain 9 0.13 Archaeplastida
Solyc05g005640.4.1 No alias Methyl-CpG-binding domain-containing protein 9... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 167 217
IPR018501 DDT_dom 742 774
No external refs found!