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  5. MA_423098g0010

MA_423098g0010


Description : WTF1 plastidial RNA basal splicing factor


Gene families : OG0001104 (Archaeplastida) Phylogenetic Tree(s): OG0001104_tree ,
OG_05_0001147 (LandPlants) Phylogenetic Tree(s): OG_05_0001147_tree ,
OG_06_0002903 (SeedPlants) Phylogenetic Tree(s): OG_06_0002903_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_423098g0010
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00268210 evm_27.TU.AmTr_v1... Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00014p00229190 evm_27.TU.AmTr_v1... Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00021p00241290 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00033p00133210 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AT4G01037 WTF1, AtWTF1 Ubiquitin carboxyl-terminal hydrolase family protein 0.06 Archaeplastida
AT5G62990 emb1692 Ubiquitin carboxyl-terminal hydrolase family protein 0.04 Archaeplastida
Gb_07993 No alias WTF1 plastidial RNA basal splicing factor 0.03 Archaeplastida
Gb_34809 No alias WTF1 plastidial RNA basal splicing factor 0.04 Archaeplastida
LOC_Os05g49610.1 No alias WTF1 plastidial RNA basal splicing factor 0.06 Archaeplastida
MA_158434g0010 No alias WTF1 plastidial RNA basal splicing factor 0.04 Archaeplastida
Mp3g04080.1 No alias WTF1 plastidial RNA basal splicing factor 0.02 Archaeplastida
Pp3c18_21300V3.1 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.06 Archaeplastida
Smo409264 No alias Protein WHATS THIS FACTOR 1 OS=Zea mays 0.03 Archaeplastida
Smo422954 No alias Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.03 Archaeplastida
Zm00001e000591_P002 No alias Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.02 Archaeplastida
Zm00001e026570_P001 No alias WTF1 plastidial RNA basal splicing factor 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006353 DNA-templated transcription, termination IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006817 phosphate ion transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
MF GO:0009975 cyclase activity IEP Neighborhood
MF GO:0009976 tocopherol cyclase activity IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR021099 PORR_domain 93 422
No external refs found!