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  5. MA_433916g0010

MA_433916g0010


Description : component Symplekin/Pta1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0001799 (Archaeplastida) Phylogenetic Tree(s): OG0001799_tree ,
OG_05_0093341 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0074298 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_433916g0010
Cluster HCCA: Cluster_393

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00088050 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.02 Archaeplastida
AMTR_s00033p00031310 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 Archaeplastida
AT1G27595 No alias CONTAINS InterPro DOMAIN/s: Symplekin tight junction... 0.05 Archaeplastida
GSVIVT01009243001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 Archaeplastida
GSVIVT01011157001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 Archaeplastida
Gb_23976 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.06 Archaeplastida
Gb_24672 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.08 Archaeplastida
LOC_Os07g49320.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.02 Archaeplastida
MA_10426054g0020 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
MA_25588g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 Archaeplastida
Mp6g03410.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.02 Archaeplastida
Pp3c2_10640V3.1 No alias HEAT repeat-containing protein 0.02 Archaeplastida
Smo442688 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 Archaeplastida
Solyc04g076910.3.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
Solyc09g005330.3.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 Archaeplastida
Zm00001e020082_P004 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!