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  5. MA_43497g0010

MA_43497g0010


Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 681.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_43497g0010
Cluster HCCA: Cluster_388

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00257020 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.02 Archaeplastida
AMTR_s00010p00262470 No alias Pentatricopeptide repeat-containing protein At2g02980,... 0.02 Archaeplastida
AMTR_s00012p00252800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.02 Archaeplastida
AMTR_s00025p00155620 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
AMTR_s00029p00204910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g19191,... 0.05 Archaeplastida
AMTR_s00029p00235510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.12 Archaeplastida
AMTR_s00039p00132380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
AMTR_s00061p00127300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
AMTR_s00081p00056740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
AMTR_s00098p00155650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39350... 0.04 Archaeplastida
AMTR_s00099p00036710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
AT3G20730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01000420001 No alias RNA processing.organelle machineries.RNA... 0.08 Archaeplastida
GSVIVT01004939001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
GSVIVT01007937001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
GSVIVT01007974001 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.05 Archaeplastida
GSVIVT01008537001 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.05 Archaeplastida
GSVIVT01010125001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
GSVIVT01010647001 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.12 Archaeplastida
GSVIVT01012174001 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.08 Archaeplastida
GSVIVT01015087001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.17 Archaeplastida
GSVIVT01018877001 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.04 Archaeplastida
GSVIVT01019116001 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.11 Archaeplastida
GSVIVT01020929001 No alias Pentatricopeptide repeat-containing protein At1g04840... 0.08 Archaeplastida
GSVIVT01021015001 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida
GSVIVT01022230001 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.05 Archaeplastida
GSVIVT01024870001 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.06 Archaeplastida
GSVIVT01026881001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.07 Archaeplastida
GSVIVT01029347001 No alias Putative pentatricopeptide repeat-containing protein... 0.12 Archaeplastida
GSVIVT01030054001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.06 Archaeplastida
GSVIVT01030080001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01030443001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.08 Archaeplastida
GSVIVT01031265001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.11 Archaeplastida
GSVIVT01036757001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.07 Archaeplastida
Gb_00259 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 Archaeplastida
Gb_01366 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_02229 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_02373 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
Gb_03354 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_03473 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
Gb_03571 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_03579 No alias RNA editing factor (MEF12) 0.11 Archaeplastida
Gb_03997 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_04091 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_04420 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
Gb_06185 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Gb_06193 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_06576 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
Gb_07442 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_07617 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Gb_08036 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 Archaeplastida
Gb_08744 No alias RNA editing factor (OTP82) 0.12 Archaeplastida
Gb_09406 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.06 Archaeplastida
Gb_09704 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_09741 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_10152 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_10157 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_10478 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
Gb_11222 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida
Gb_11389 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_11545 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_12585 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_14133 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_14323 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_16546 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_17177 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_17379 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_18600 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_19299 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_20910 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_21430 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.08 Archaeplastida
Gb_21443 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_21567 No alias RNA editing factor (MEF19) 0.06 Archaeplastida
Gb_21824 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 Archaeplastida
Gb_22613 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Gb_23088 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_23124 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.08 Archaeplastida
Gb_23671 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_23798 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.07 Archaeplastida
Gb_23924 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_24114 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_24126 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_24515 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_24816 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Gb_24928 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_25129 No alias RNA editing factor (ECD1) 0.03 Archaeplastida
Gb_25271 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_26049 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_26158 No alias RNA editing factor (OTP82) 0.09 Archaeplastida
Gb_27176 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_27454 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
Gb_28582 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_29543 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_30004 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.08 Archaeplastida
Gb_31266 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_31702 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_32017 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.09 Archaeplastida
Gb_32921 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_33062 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_33070 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
Gb_33294 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_33374 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Archaeplastida
Gb_33959 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_34299 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.15 Archaeplastida
Gb_36085 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_36538 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Gb_36676 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_36839 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.14 Archaeplastida
Gb_37516 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_37517 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_37554 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_38129 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_38158 No alias OTP70 plastidial RNA splicing factor 0.11 Archaeplastida
Gb_38232 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_38504 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_39298 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_40436 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_40766 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.14 Archaeplastida
LOC_Os03g59264.1 No alias lectin chaperone (CRT) 0.02 Archaeplastida
LOC_Os06g12510.1 No alias Pentatricopeptide repeat-containing protein At5g15300... 0.12 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_10432670g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
MA_10435641g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.2 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_112066g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_11454g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_114565g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.04 Archaeplastida
MA_116442g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_136188g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_138190g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_140208g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_14381g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.07 Archaeplastida
MA_16226g0010 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Archaeplastida
MA_18165g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
MA_18383g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_185098g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.05 Archaeplastida
MA_285386g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.08 Archaeplastida
MA_3449g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_36643g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
MA_39263g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_474261g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.2 Archaeplastida
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_57048g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.02 Archaeplastida
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_66417g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.07 Archaeplastida
MA_68707g0010 No alias RNA editing factor (MEF1) 0.02 Archaeplastida
MA_77437g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Smo11658 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.01 Archaeplastida
Smo126928 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo136851 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 Archaeplastida
Smo334 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 Archaeplastida
Smo33898 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.01 Archaeplastida
Smo51647 No alias Pentatricopeptide repeat-containing protein At1g15510,... 0.01 Archaeplastida
Smo55271 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo61257 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.01 Archaeplastida
Smo79648 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo82268 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.01 Archaeplastida
Smo86405 No alias Putative pentatricopeptide repeat-containing protein... 0.01 Archaeplastida
Smo88697 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.01 Archaeplastida
Smo99993 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
Solyc01g097670.4.1 No alias RNA editing factor (ECD1) 0.04 Archaeplastida
Solyc02g005280.1.1 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.07 Archaeplastida
Solyc03g007840.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Solyc03g082830.2.1 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.08 Archaeplastida
Solyc03g111210.4.1 No alias RNA editing factor (OTP80) 0.04 Archaeplastida
Solyc03g116000.1.1 No alias Pentatricopeptide repeat-containing protein At3g47530... 0.04 Archaeplastida
Solyc03g119950.1.1 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
Solyc05g006800.2.1 No alias Pentatricopeptide repeat-containing protein At1g59720,... 0.02 Archaeplastida
Solyc05g013200.1.1 No alias RNA editing factor (OTP85) 0.02 Archaeplastida
Solyc06g009500.1.1 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Solyc06g084580.1.1 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
Solyc07g005740.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.06 Archaeplastida
Solyc07g062820.1.1 No alias RNA editing factor (SEL1/PDM1) 0.05 Archaeplastida
Solyc07g065730.1.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
Solyc09g082450.1.1 No alias RNA editing factor (YS1) 0.03 Archaeplastida
Solyc11g008940.1.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Solyc11g008970.1.1 No alias Pentatricopeptide repeat-containing protein At4g39952,... 0.03 Archaeplastida
Solyc11g062250.2.1 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.03 Archaeplastida
Solyc12g006575.1.1 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Zm00001e009339_P001 No alias no hits & (original description: none) 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 120 145
IPR002885 Pentatricopeptide_repeat 524 548
IPR002885 Pentatricopeptide_repeat 221 246
IPR002885 Pentatricopeptide_repeat 48 92
IPR002885 Pentatricopeptide_repeat 449 496
IPR002885 Pentatricopeptide_repeat 347 395
IPR002885 Pentatricopeptide_repeat 247 293
IPR002885 Pentatricopeptide_repeat 146 193
IPR032867 DYW_dom 623 745
No external refs found!