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  5. MA_4507637g0010

MA_4507637g0010


Description : Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum (sp|p62981|rs27a_soltu : 128.0)


Gene families : OG0000077 (Archaeplastida) Phylogenetic Tree(s): OG0000077_tree ,
OG_05_0093365 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0074326 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_4507637g0010
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00104050 evm_27.TU.AmTr_v1... Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris 0.03 Archaeplastida
GSVIVT01038617001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
MA_6985771g0010 No alias Ubiquitin-40S ribosomal protein S27a OS=Hordeum vulgare... 0.01 Archaeplastida
MA_9108314g0010 No alias Polyubiquitin 3 OS=Arabidopsis thaliana... 0.01 Archaeplastida
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.03 Archaeplastida
Pp3c24_430V3.1 No alias ubiquitin extension protein 1 0.02 Archaeplastida
Smo101548 No alias Polyubiquitin 3 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc01g068045.1.1 No alias component RPS27a of SSU proteome 0.02 Archaeplastida
Solyc03g082570.4.1 No alias component RPL40 of LSU proteome component 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 66
No external refs found!