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  5. AT5G51300

AT5G51300


Description : splicing factor-related


Gene families : OG0001047 (Archaeplastida) Phylogenetic Tree(s): OG0001047_tree ,
OG_05_0001290 (LandPlants) Phylogenetic Tree(s): OG_05_0001290_tree ,
OG_06_0004522 (SeedPlants) Phylogenetic Tree(s): OG_06_0004522_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G51300
Cluster HCCA: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001154.10 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 Archaeplastida
Cre09.g386731 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
GSVIVT01014212001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 Archaeplastida
Gb_09287 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida
Gb_19921 No alias pre-mRNA splicing factor (SF1) 0.06 Archaeplastida
Gb_23987 No alias pre-mRNA splicing factor (SF1) 0.04 Archaeplastida
Gb_41039 No alias pre-mRNA splicing factor (SF1) 0.04 Archaeplastida
LOC_Os08g01070.2 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_11962g0020 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida
MA_15045g0010 No alias pre-mRNA splicing factor (SF1) 0.04 Archaeplastida
MA_160895g0010 No alias pre-mRNA splicing factor (SF1) 0.04 Archaeplastida
MA_8555g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp7g15050.1 No alias pre-mRNA splicing factor (SF1) 0.06 Archaeplastida
Pp3c7_10890V3.1 No alias splicing factor-related 0.02 Archaeplastida
Smo77639 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Zm00001e008383_P001 No alias pre-mRNA splicing factor (SF1) 0.05 Archaeplastida
Zm00001e040741_P001 No alias pre-mRNA splicing factor (SF1) 0.05 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome RCA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008380 RNA splicing NAS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
BP GO:0000911 cytokinesis by cell plate formation IEP Neighborhood
CC GO:0000932 P-body IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0001085 RNA polymerase II transcription factor binding IEP Neighborhood
MF GO:0001091 RNA polymerase II basal transcription factor binding IEP Neighborhood
MF GO:0001093 TFIIB-class transcription factor binding IEP Neighborhood
MF GO:0001098 basal transcription machinery binding IEP Neighborhood
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0004004 ATP-dependent RNA helicase activity IEP Neighborhood
MF GO:0004647 phosphoserine phosphatase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004821 histidine-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005635 nuclear envelope IEP Neighborhood
CC GO:0005665 RNA polymerase II, core complex IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
CC GO:0005956 protein kinase CK2 complex IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006261 DNA-dependent DNA replication IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006342 chromatin silencing IEP Neighborhood
BP GO:0006346 methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006427 histidyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0007346 regulation of mitotic cell cycle IEP Neighborhood
MF GO:0008186 RNA-dependent ATPase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
CC GO:0008278 cohesin complex IEP Neighborhood
BP GO:0008284 positive regulation of cell proliferation IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009292 genetic transfer IEP Neighborhood
BP GO:0009294 DNA mediated transformation IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009615 response to virus IEP Neighborhood
BP GO:0009616 virus induced gene silencing IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009629 response to gravity IEP Neighborhood
BP GO:0009630 gravitropism IEP Neighborhood
BP GO:0009756 carbohydrate mediated signaling IEP Neighborhood
BP GO:0009790 embryo development IEP Neighborhood
BP GO:0009793 embryo development ending in seed dormancy IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009910 negative regulation of flower development IEP Neighborhood
BP GO:0009933 meristem structural organization IEP Neighborhood
BP GO:0010022 meristem determinacy IEP Neighborhood
BP GO:0010165 response to X-ray IEP Neighborhood
BP GO:0010182 sugar mediated signaling pathway IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP Neighborhood
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP Neighborhood
BP GO:0010383 cell wall polysaccharide metabolic process IEP Neighborhood
BP GO:0010410 hemicellulose metabolic process IEP Neighborhood
BP GO:0010413 glucuronoxylan metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010603 regulation of cytoplasmic mRNA processing body assembly IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016246 RNA interference IEP Neighborhood
CC GO:0016363 nuclear matrix IEP Neighborhood
BP GO:0016441 posttranscriptional gene silencing IEP Neighborhood
BP GO:0016444 somatic cell DNA recombination IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
CC GO:0016514 SWI/SNF complex IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0016926 protein desumoylation IEP Neighborhood
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Neighborhood
BP GO:0017148 negative regulation of translation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019915 lipid storage IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
BP GO:0030422 production of siRNA involved in RNA interference IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031048 chromatin silencing by small RNA IEP Neighborhood
BP GO:0031050 dsRNA fragmentation IEP Neighborhood
BP GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031334 positive regulation of protein complex assembly IEP Neighborhood
MF GO:0031490 chromatin DNA binding IEP Neighborhood
BP GO:0031497 chromatin assembly IEP Neighborhood
BP GO:0031507 heterochromatin assembly IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032269 negative regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032506 cytokinetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
CC GO:0033186 CAF-1 complex IEP Neighborhood
BP GO:0033233 regulation of protein sumoylation IEP Neighborhood
BP GO:0033234 negative regulation of protein sumoylation IEP Neighborhood
BP GO:0033962 cytoplasmic mRNA processing body assembly IEP Neighborhood
MF GO:0034046 poly(G) binding IEP Neighborhood
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0035194 posttranscriptional gene silencing by RNA IEP Neighborhood
CC GO:0035770 ribonucleoprotein granule IEP Neighborhood
BP GO:0035821 modification of morphology or physiology of other organism IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP Neighborhood
BP GO:0040029 regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0042127 regulation of cell proliferation IEP Neighborhood
BP GO:0042753 positive regulation of circadian rhythm IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043687 post-translational protein modification IEP Neighborhood
BP GO:0044003 modification by symbiont of host morphology or physiology IEP Neighborhood
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Neighborhood
BP GO:0044089 positive regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
BP GO:0044764 multi-organism cellular process IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0045491 xylan metabolic process IEP Neighborhood
BP GO:0045492 xylan biosynthetic process IEP Neighborhood
BP GO:0045787 positive regulation of cell cycle IEP Neighborhood
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045931 positive regulation of mitotic cell cycle IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0048366 leaf development IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048532 anatomical structure arrangement IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0048581 negative regulation of post-embryonic development IEP Neighborhood
BP GO:0048645 animal organ formation IEP Neighborhood
BP GO:0048825 cotyledon development IEP Neighborhood
BP GO:0048827 phyllome development IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0050665 hydrogen peroxide biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0050826 response to freezing IEP Neighborhood
BP GO:0051093 negative regulation of developmental process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0051241 negative regulation of multicellular organismal process IEP Neighborhood
BP GO:0051248 negative regulation of protein metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
BP GO:0051254 positive regulation of RNA metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051568 histone H3-K4 methylation IEP Neighborhood
BP GO:0051607 defense response to virus IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0051817 modification of morphology or physiology of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052018 modulation by symbiont of RNA levels in host IEP Neighborhood
BP GO:0052249 modulation of RNA levels in other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
MF GO:0070063 RNA polymerase binding IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Neighborhood
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Neighborhood
CC GO:0070603 SWI/SNF superfamily-type complex IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0070717 poly-purine tract binding IEP Neighborhood
BP GO:0070734 histone H3-K27 methylation IEP Neighborhood
BP GO:0070828 heterochromatin organization IEP Neighborhood
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0080188 RNA-directed DNA methylation IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0098586 cellular response to virus IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
BP GO:0099402 plant organ development IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1902115 regulation of organelle assembly IEP Neighborhood
BP GO:1902117 positive regulation of organelle assembly IEP Neighborhood
BP GO:1902410 mitotic cytokinetic process IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
BP GO:1903320 regulation of protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:1903321 negative regulation of protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:1903409 reactive oxygen species biosynthetic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000241 regulation of reproductive process IEP Neighborhood
BP GO:2000242 negative regulation of reproductive process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 256 329
IPR000504 RRM_dom 482 551
IPR032570 SF1-HH 126 237
No external refs found!