AT5G52020

Description : Integrase-type DNA-binding superfamily protein

Gene families : OG0000003 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000001 (LandPlants) Phylogenetic Tree(s): OG_05_0000001_tree ,
OG_06_0000070 (SeedPlants) Phylogenetic Tree(s): OG_06_0000070_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G52020
Cluster	HCCA: Cluster_234

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00185480	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
AT1G71130	No alias	Integrase-type DNA-binding superfamily protein	0.05	Archaeplastida
AT5G07580	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
AT5G11190	SHN3	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
GSVIVT01001089001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
GSVIVT01008649001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01013918001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
GSVIVT01013931001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
GSVIVT01014291001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
GSVIVT01031747001	No alias	Alpha-amylase type B isozyme OS=Hordeum vulgare	0.04	Archaeplastida
GSVIVT01033416001	No alias	External stimuli response.biotic...	0.05	Archaeplastida
GSVIVT01035852001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
GSVIVT01036388001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
Gb_03783	No alias	transcription factor (ERF)	0.02	Archaeplastida
Gb_23321	No alias	transcription factor (ERF)	0.02	Archaeplastida
Gb_32995	No alias	Ethylene-responsive transcription factor ERF016...	0.02	Archaeplastida
Gb_41836	No alias	transcription factor (ERF)	0.02	Archaeplastida
LOC_Os03g22170.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
LOC_Os03g64260.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
LOC_Os04g44670.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
LOC_Os04g46240.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
LOC_Os08g07700.1	No alias	Ethylene-responsive transcription factor ERF087...	0.03	Archaeplastida
LOC_Os08g41030.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_10427586g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_10430769g0010	No alias	transcription factor (DREB)	0.03	Archaeplastida
MA_115502g0010	No alias	transcription factor (DREB)	0.03	Archaeplastida
MA_135279g0010	No alias	transcription factor (ERF)	0.04	Archaeplastida
MA_179692g0020	No alias	transcription factor (ERF)	0.02	Archaeplastida
MA_2040g0010	No alias	transcription factor (DREB)	0.03	Archaeplastida
MA_428433g0010	No alias	transcription factor (DREB)	0.03	Archaeplastida
MA_47696g0010	No alias	transcription factor (ERF)	0.05	Archaeplastida
MA_5730259g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_647924g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_9565555g0010	No alias	Ethylene-responsive transcription factor ERF016...	0.04	Archaeplastida
Pp3c4_31920V3.1	No alias	ethylene responsive element binding factor 1	0.03	Archaeplastida
Pp3c6_19350V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
Pp3c9_2020V3.1	No alias	erf domain protein 9	0.03	Archaeplastida
Solyc01g009440.3.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
Solyc01g090310.3.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc01g091760.3.1	No alias	transcription factor (ERF). transcription factor (ERN1)	0.04	Archaeplastida
Solyc03g093560.1.1	No alias	transcription factor (ERF)	0.04	Archaeplastida
Solyc03g114440.1.1	No alias	transcription factor (ERF). transcription factor (ERN1)	0.04	Archaeplastida
Solyc04g051360.3.1	No alias	transcription factor (ERF)	0.04	Archaeplastida
Solyc04g071770.3.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
Solyc04g080910.1.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
Solyc07g053740.1.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
Solyc12g042210.2.1	No alias	transcription factor (ERF)	0.04	Archaeplastida
Zm00001e001139_P001	No alias	Ethylene-responsive transcription factor ERF014...	0.03	Archaeplastida
Zm00001e003579_P001	No alias	Ethylene-responsive transcription factor ERF015...	0.03	Archaeplastida
Zm00001e014413_P001	No alias	transcription factor (DREB)	0.03	Archaeplastida
Zm00001e014659_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e015327_P001	No alias	transcription factor (DREB)	0.03	Archaeplastida
Zm00001e023224_P001	No alias	transcription factor (DREB)	0.05	Archaeplastida
Zm00001e023816_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e033537_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e033541_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e034242_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e036201_P001	No alias	Ethylene-responsive transcription factor ERF014...	0.03	Archaeplastida
Zm00001e041288_P001	No alias	transcription factor (DREB)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045893	positive regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050832	defense response to fungus	IEP	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005887	integral component of plasma membrane	IEP	Neighborhood
BP	GO:0009690	cytokinin metabolic process	IEP	Neighborhood
BP	GO:0009691	cytokinin biosynthetic process	IEP	Neighborhood
BP	GO:0010371	regulation of gibberellin biosynthetic process	IEP	Neighborhood
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	Neighborhood
MF	GO:0015112	nitrate transmembrane transporter activity	IEP	Neighborhood
BP	GO:0019216	regulation of lipid metabolic process	IEP	Neighborhood
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
BP	GO:0032350	regulation of hormone metabolic process	IEP	Neighborhood
BP	GO:0036294	cellular response to decreased oxygen levels	IEP	Neighborhood
BP	GO:0040034	regulation of development, heterochronic	IEP	Neighborhood
BP	GO:0043455	regulation of secondary metabolic process	IEP	Neighborhood
BP	GO:0046688	response to copper ion	IEP	Neighborhood
BP	GO:0046885	regulation of hormone biosynthetic process	IEP	Neighborhood
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	Neighborhood
BP	GO:0048506	regulation of timing of meristematic phase transition	IEP	Neighborhood
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEP	Neighborhood
MF	GO:0051119	sugar transmembrane transporter activity	IEP	Neighborhood
BP	GO:0062012	regulation of small molecule metabolic process	IEP	Neighborhood
BP	GO:0071453	cellular response to oxygen levels	IEP	Neighborhood
BP	GO:0071456	cellular response to hypoxia	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	64	112

External Links

No external refs found!

AT5G52020

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation