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  5. MA_474372g0010

MA_474372g0010


Description : pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_474372g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
AMTR_s00171p00044290 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
AT1G11920 No alias Pectin lyase-like superfamily protein 0.07 Archaeplastida
AT1G14420 AT59 Pectate lyase family protein 0.01 Archaeplastida
AT2G02720 No alias Pectate lyase family protein 0.01 Archaeplastida
AT3G07010 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
AT3G24230 No alias Pectate lyase family protein 0.02 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
AT3G27400 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT4G22080 RHS14 root hair specific 14 0.01 Archaeplastida
AT5G09280 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G15110 No alias Pectate lyase family protein 0.01 Archaeplastida
AT5G48900 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
AT5G55720 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.01 Archaeplastida
LOC_Os06g05209.1 No alias pectate lyase 0.01 Archaeplastida
MA_101171g0010 No alias pectate lyase 0.03 Archaeplastida
MA_10205415g0010 No alias pectate lyase 0.06 Archaeplastida
MA_10426822g0020 No alias pectate lyase 0.02 Archaeplastida
MA_10430145g0030 No alias pectate lyase 0.03 Archaeplastida
MA_10437227g0020 No alias pectate lyase 0.02 Archaeplastida
MA_10437227g0030 No alias pectate lyase 0.02 Archaeplastida
MA_1164682g0010 No alias pectate lyase 0.06 Archaeplastida
MA_476625g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_6474333g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.11 Archaeplastida
MA_91467g0020 No alias pectate lyase 0.03 Archaeplastida
MA_956526g0010 No alias pectate lyase 0.03 Archaeplastida
MA_97947g0010 No alias pectate lyase 0.03 Archaeplastida
Pp3c1_4040V3.1 No alias Pectin lyase-like superfamily protein 0.07 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Solyc02g093580.4.1 No alias pectate lyase 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002022 Pec_lyase 6 194
No external refs found!