Description : RNA editing factor (POCO)
Gene families : OG0000235 (Archaeplastida) Phylogenetic Tree(s): OG0000235_tree ,
OG_05_0001224 (LandPlants) Phylogenetic Tree(s): OG_05_0001224_tree ,
OG_06_0002515 (SeedPlants) Phylogenetic Tree(s): OG_06_0002515_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_492314g0010 | |
Cluster | HCCA: Cluster_321 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00095p00019470 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g80270,... | 0.07 | Archaeplastida | |
AMTR_s00095p00027730 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g80270,... | 0.03 | Archaeplastida | |
AMTR_s00135p00094680 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g27460... | 0.02 | Archaeplastida | |
AT1G02370 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.07 | Archaeplastida | |
AT1G15480 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT1G60770 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.08 | Archaeplastida | |
AT1G80270 | PPR596 | PENTATRICOPEPTIDE REPEAT 596 | 0.04 | Archaeplastida | |
AT3G15590 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT4G01990 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.06 | Archaeplastida | |
AT4G02820 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.07 | Archaeplastida | |
AT4G21705 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT5G09450 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Archaeplastida | |
GSVIVT01002065001 | No alias | Pentatricopeptide repeat-containing protein At4g21705,... | 0.05 | Archaeplastida | |
GSVIVT01006654001 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | Archaeplastida | |
GSVIVT01020533001 | No alias | Pentatricopeptide repeat-containing protein At2g20710,... | 0.06 | Archaeplastida | |
GSVIVT01020534001 | No alias | Pentatricopeptide repeat-containing protein At2g20710,... | 0.03 | Archaeplastida | |
GSVIVT01024495001 | No alias | Pentatricopeptide repeat-containing protein At4g02820,... | 0.06 | Archaeplastida | |
GSVIVT01031246001 | No alias | Pentatricopeptide repeat-containing protein At4g01990,... | 0.1 | Archaeplastida | |
GSVIVT01033642001 | No alias | Pentatricopeptide repeat-containing protein At1g80270,... | 0.07 | Archaeplastida | |
Gb_03507 | No alias | Pentatricopeptide repeat-containing protein At4g02820,... | 0.03 | Archaeplastida | |
Gb_03508 | No alias | Pentatricopeptide repeat-containing protein At4g02820,... | 0.04 | Archaeplastida | |
Gb_09452 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | Archaeplastida | |
Gb_14211 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | Archaeplastida | |
Gb_14576 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | Archaeplastida | |
Gb_20238 | No alias | RNA editing factor (POCO) | 0.06 | Archaeplastida | |
Gb_27873 | No alias | RNA editing factor (POCO) | 0.06 | Archaeplastida | |
Gb_38114 | No alias | RNA editing factor (POCO) | 0.03 | Archaeplastida | |
LOC_Os01g17320.1 | No alias | RNA editing factor (POCO) | 0.02 | Archaeplastida | |
LOC_Os01g19548.1 | No alias | Pentatricopeptide repeat-containing protein At1g02370,... | 0.02 | Archaeplastida | |
LOC_Os02g55310.1 | No alias | Pentatricopeptide repeat-containing protein At5g27460... | 0.02 | Archaeplastida | |
LOC_Os04g25410.1 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.04 | Archaeplastida | |
LOC_Os04g37720.1 | No alias | Pentatricopeptide repeat-containing protein At5g09450,... | 0.03 | Archaeplastida | |
LOC_Os07g12140.1 | No alias | RNA editing factor (POCO) | 0.02 | Archaeplastida | |
LOC_Os07g40750.1 | No alias | Pentatricopeptide repeat-containing protein At4g21705,... | 0.03 | Archaeplastida | |
LOC_Os10g35730.1 | No alias | Pentatricopeptide repeat-containing protein At4g02820,... | 0.02 | Archaeplastida | |
LOC_Os10g35750.1 | No alias | Pentatricopeptide repeat-containing protein At2g20710,... | 0.02 | Archaeplastida | |
LOC_Os10g35760.2 | No alias | Pentatricopeptide repeat-containing protein At2g20710,... | 0.03 | Archaeplastida | |
LOC_Os12g07260.1 | No alias | RNA editing factor (POCO) | 0.07 | Archaeplastida | |
LOC_Os12g34340.1 | No alias | Pentatricopeptide repeat-containing protein At4g02820,... | 0.05 | Archaeplastida | |
MA_100637g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.06 | Archaeplastida | |
MA_10431989g0010 | No alias | RNA editing factor (POCO) | 0.03 | Archaeplastida | |
MA_10435629g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.04 | Archaeplastida | |
MA_29806g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.04 | Archaeplastida | |
MA_94340g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | Archaeplastida | |
Pp3c18_8600V3.1 | No alias | PENTATRICOPEPTIDE REPEAT 596 | 0.04 | Archaeplastida | |
Pp3c21_11730V3.1 | No alias | PENTATRICOPEPTIDE REPEAT 596 | 0.02 | Archaeplastida | |
Solyc01g079320.4.1 | No alias | Pentatricopeptide repeat-containing protein At1g02370,... | 0.06 | Archaeplastida | |
Solyc02g078330.3.1 | No alias | Pentatricopeptide repeat-containing protein At2g20710,... | 0.03 | Archaeplastida | |
Solyc07g063220.4.1 | No alias | Pentatricopeptide repeat-containing protein At4g21705,... | 0.06 | Archaeplastida | |
Solyc11g006380.2.1 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.08 | Archaeplastida | |
Solyc12g020050.2.1 | No alias | RNA editing factor (POCO) | 0.06 | Archaeplastida | |
Zm00001e012594_P001 | No alias | Pentatricopeptide repeat-containing protein At4g21705,... | 0.04 | Archaeplastida | |
Zm00001e025470_P001 | No alias | RNA editing factor (POCO) | 0.02 | Archaeplastida | |
Zm00001e026211_P002 | No alias | Pentatricopeptide repeat-containing protein At1g02370,... | 0.1 | Archaeplastida | |
Zm00001e036620_P001 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.08 | Archaeplastida | |
Zm00001e039746_P002 | No alias | Pentatricopeptide repeat-containing protein At4g02820,... | 0.05 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
MF | GO:0000774 | adenyl-nucleotide exchange factor activity | IEP | Neighborhood |
MF | GO:0003674 | molecular_function | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003690 | double-stranded DNA binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
MF | GO:0003922 | GMP synthase (glutamine-hydrolyzing) activity | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
CC | GO:0005634 | nucleus | IEP | Neighborhood |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006177 | GMP biosynthetic process | IEP | Neighborhood |
BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
BP | GO:0006338 | chromatin remodeling | IEP | Neighborhood |
BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Neighborhood |
BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
BP | GO:0006367 | transcription initiation from RNA polymerase II promoter | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0006457 | protein folding | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
MF | GO:0008168 | methyltransferase activity | IEP | Neighborhood |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
BP | GO:0009116 | nucleoside metabolic process | IEP | Neighborhood |
BP | GO:0009119 | ribonucleoside metabolic process | IEP | Neighborhood |
BP | GO:0009163 | nucleoside biosynthetic process | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Neighborhood |
MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
BP | GO:0042278 | purine nucleoside metabolic process | IEP | Neighborhood |
BP | GO:0042451 | purine nucleoside biosynthetic process | IEP | Neighborhood |
BP | GO:0042455 | ribonucleoside biosynthetic process | IEP | Neighborhood |
MF | GO:0042802 | identical protein binding | IEP | Neighborhood |
MF | GO:0042803 | protein homodimerization activity | IEP | Neighborhood |
CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
BP | GO:0046037 | GMP metabolic process | IEP | Neighborhood |
BP | GO:0046128 | purine ribonucleoside metabolic process | IEP | Neighborhood |
BP | GO:0046129 | purine ribonucleoside biosynthetic process | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
MF | GO:0051087 | chaperone binding | IEP | Neighborhood |
BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | Neighborhood |
MF | GO:0060590 | ATPase regulator activity | IEP | Neighborhood |
BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
BP | GO:1901068 | guanosine-containing compound metabolic process | IEP | Neighborhood |
BP | GO:1901070 | guanosine-containing compound biosynthetic process | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
BP | GO:1901657 | glycosyl compound metabolic process | IEP | Neighborhood |
BP | GO:1901659 | glycosyl compound biosynthetic process | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR033443 | PPR_long | 132 | 283 |
No external refs found! |